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Methods for the covalent attachment of nucleic acids and their derivatives to proteins

Galina Yakovlevna Sheflyan 1
Galina Yakovlevna Sheflyan
, 
Elena Aleksandrovna Kubareva 1
Elena Aleksandrovna Kubareva
, 
Elizaveta Sergeevna Gromova 2
Elizaveta Sergeevna Gromova
1 A. N. Belozersky Institute of Physico-Chemical Biology, M. V. Lomonosov Moscow State University
2 M. V. Lomonosov Moscow State University, Department of Chemistry
10.1070/RC1996v065n08ABEH000277
Published 30 November 1995
Communication , Volume 65, Issue 8, 709-724
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Sheflyan G. Y., Kubareva E. A., Gromova E. S. Methods for the covalent attachment of nucleic acids and their derivatives to proteins // Russian Chemical Reviews. 1996. Vol. 65. No. 8. pp. 709-724.
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Sheflyan G. Y., Kubareva E. A., Gromova E. S. Methods for the covalent attachment of nucleic acids and their derivatives to proteins // Russian Chemical Reviews. 1996. Vol. 65. No. 8. pp. 709-724.
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TY - JOUR
DO - 10.1070/RC1996v065n08ABEH000277
UR - https://rcr.colab.ws/publications/10.1070/RC1996v065n08ABEH000277
TI - Methods for the covalent attachment of nucleic acids and their derivatives to proteins
T2 - Russian Chemical Reviews
AU - Sheflyan, Galina Yakovlevna
AU - Kubareva, Elena Aleksandrovna
AU - Gromova, Elizaveta Sergeevna
PY - 1996
DA - 1995/11/30
PB - ANO Editorial Board of the journal Uspekhi Khimii
SP - 709-724
IS - 8
VL - 65
ER -
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@article{1996_Sheflyan,
author = {Galina Yakovlevna Sheflyan and Elena Aleksandrovna Kubareva and Elizaveta Sergeevna Gromova},
title = {Methods for the covalent attachment of nucleic acids and their derivatives to proteins},
journal = {Russian Chemical Reviews},
year = {1996},
volume = {65},
publisher = {ANO Editorial Board of the journal Uspekhi Khimii},
month = {Nov},
url = {https://rcr.colab.ws/publications/10.1070/RC1996v065n08ABEH000277},
number = {8},
pages = {709--724},
doi = {10.1070/RC1996v065n08ABEH000277}
}
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Sheflyan, Galina Yakovlevna, et al. “Methods for the covalent attachment of nucleic acids and their derivatives to proteins.” Russian Chemical Reviews, vol. 65, no. 8, Nov. 1996, pp. 709-724. https://rcr.colab.ws/publications/10.1070/RC1996v065n08ABEH000277.
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Abstract

The methods for the affinity modification of proteins, specific to nucleic acids, by activated nucleic acid analogues and their components, are considered. The active groups introduced into proteins or nucleic acids and the symmetrical cross-linking agents used to obtain covalent protein–nucleic acid complexes are listed. The methods for the analysis of covalently linked protein–nucleic acid adducts as well as procedures for the identification of the aminoacids in the protein participating in the formation of bonds with nucleic acids are surveyed.The bibliography includes 112 references.

References

6.
Detecting protein-DNA interactions in vivo: distribution of RNA polymerase on specific bacterial genes.
Gilmour D.S., Lis J.T.
Proceedings of the National Academy of Sciences of the United States of America , 1984
11.
DNA strand specificity in promoter recognition by RNA polymerase
Park C.S., Hillel Z., Wu C.
Nucleic Acids Research , 1980
19.
Crosslinking of Dam methyltransferase with S‐adenosyl‐methionine
Wenzel C., Moulard M., Lobner-Olesen A., Guschlbauer W.
FEBS Letters , 1991
21.
Protein—DNA cross-linking
Welsh J., Cantor C.R.
Trends in Biochemical Sciences , 1984
27.
Contacts between the lac repressor and the thymines in the lac operator.
Ogata R., Gilbert W.
Proceedings of the National Academy of Sciences of the United States of America , 1977
29.
A specific, UV-induced RNA-protein crosslink using 5-bromouridine-substituted RNA
Gott J.M., Willis M.C., Koch T.H., Uhlenbeck O.C.
Biochemistry , 1991
31.
Photo-cross-linking of CRP to nonspecific DNA in the absence of cAMP, DNA interacts with both the N- and C-terminal parts of the protein
Katouzian-Safadi M., Blazy B., Cremet J.Y., Le Caer J.P., Rossier J., Charlier M.
Biochemistry , 1993
32.
Determination of the DNA-interacting region of the archaebacterial chromosomal protein MC1. Photocrosslinks with 5-bromouracil-substituted DNA
Katousian-Safadi M., Laine B., Chartier F., Cremet J., Belaiche D., Sautiere P., Charlier M.
Nucleic Acids Research , 1991
40.
5-Azido-2'-deoxyuridine 5'-triphosphate: a photoaffinity-labeling reagent and tool for the enzymatic synthesis of photoactive DNA.
Evans R.K., Johnson J.D., Haley B.E.
Proceedings of the National Academy of Sciences of the United States of America , 1986
44.
Stem-loop IV of 5S rRNA lies close to the peptidyltransferase center
Dontsova O., Tishkov V., Dokudovskaya S., Bogdanov A., Döring T., Rinke-Appel J., Thamm S., Greuer B., Brimacombe R.
Proceedings of the National Academy of Sciences of the United States of America , 1994
46.
Contacts between 16S ribosomal RNA and mRNA, within the spacer region separating the AUG initiator codon and the shine -dalgarno sequence; a site-directed cross-linking study
Rinke-Appel J., Jünke N., Brimacombe R., Lavrik I., Dokudovskaya S., Dontsova O., Bogdanov A.
Nucleic Acids Research , 1994
48.
mRNA‐ribosome interactions
Dokudovskaya S., Dontsova O., Bogdanova S., Bogdanov A., Brimacombe R.
Biotechnology and Applied Biochemistry , 1993
49.
49
A. A. Krasnovskii
Biofizika , 1958
50.
Laser crosslinking ofE.coliRNA polymerase and T7 DNA
Harrison C.A., Turner D.H., Hinkle D.C.
Nucleic Acids Research , 1982
51.
Laser-induced protein-DNA cross-links via psoralen furanside monoadducts
Sastry S.S., Spielmann H.P., Hoang Q.S., Phillips A.M., Sancar A., Hearst J.E.
Biochemistry , 1993
54.
54
R. Livingston
J. Phys. Chem. , 1941
55.
55
G. A. Bogdanovskii
1958
56.
56
T. Iasui
Bull. Chem. Soc. Japan. , 1935
59.
Conformational changes inE.coliRNA polymerase during promoter recognition
Brodolin K.L., Studitsky V.M., Mirzabekov A.D.
Nucleic Acids Research , 1993
63.
63
1930
64.
A blotting method for monitoring the formation of chemically induced DNA-protein complexes
Cohen M.D., Miller C.A., Xu L.S., Snow E.T., Costa M.
Analytical Biochemistry , 1990
65.
PSORALEN PHOTOCHEMISTRY
Hearst J.E.
Annual Review of Biophysics and Biophysical Chemistry , 1981
66.
Fluorescent labeling of DNA in solution with covalently bound acriflavin
Levinson J.W., Desostoa A., Liebes L.F., Mccormick J.J.
Biochimica et Biophysica Acta (BBA) - Nucleic Acids and Protein Synthesis , 1976
67.
The method of crosslinking histones to DNA partly depurinated at neutral pH.
Levina E.S., Bavykin S.G., Shick V.V., Mirzabekov A.D.
Analytical Biochemistry , 1981
68.
Structure of Nucleosomes, Chromatin, and RNA Polymerase-Promoter Complex as Revealed by DNA-Protein Cross-linking
Mirzabekov A.D., Bavykin S.G., Karpov V.L., Preobrazhenskaya O.V., Ebralidze K.K., Tuneev V.M., Melnikova A.F., Goguadze E.G., Chenchick A.A., Beabealashvili R.S.
Cold Spring Harbor Symposia on Quantitative Biology , 1983
70.
70
N. Bubnov
Biofizika , 1960
71.
Identification of DNA binding proteins in vaccinia virus by DNA-protein crosslinking
Chkheidze A.N., Prikhod'ko G.G., Karpov V.L., Vassilenko S.K., Mirzabekov A.D.
FEBS Letters , 1993
72.
A new reaction useful for chemical cross-linking between nucleic acids and proteins
Nitta N., Kuge O., Yui S., Tsugawa A., Negishi K., Hayatsu H.
FEBS Letters , 1984
73.
73
T. Skwarski
Chem. Abs. , 1957
74.
74
F. F. Litvin
Uspekhi Fiz. Nauk , 1960
75.
75
V. B. Evstigneev
Dokl. Akad. Nauk SSSR , 1950
76.
76
A. N. Terenin
"Fotokhimiya Krasitelei" (The Photochemistry of Dyes) , 1947
77.
77
A. A. Krasnovskii
Dokl. Akad. Nauk SSSR , 1948
78.
78
A. A. Krasnovskii
Dokl. Akad. Nauk SSSR , 1949
79.
79
A. A. Krasnovskii
Dokl. Akad. Nauk SSSR , 1952
80.
80
N. N. Mel'nikov
Zhur. Obshch. Khim. , 1937
82.
Enzyme inhibition by fluoro compounds.
Abeles R.H., Alston T.A.
Journal of Biological Chemistry , 1990
84.
Thymidylate Synthase and Fluorouracil
Ivanetich K.M., Santi D.V.
Advances in Experimental Medicine and Biology , 1988
89.
Direct identification of the active-site nucleophile in a DNA (cytosine-5)-methyltransferase
Chen L., MacMillan A.M., Chang W., Ezaz-Nikpay K., Lane W.S., Verdine G.L.
Biochemistry , 1991
91.
The cysteine conserved among DNA cytosine methylasesis required for methyl transfer, but not for specific DNA binding
Wyszynski M.W., Gabbara S., Kubareva E.A., Romanova E.A., Oretskaya T.S., Gromova E.S., Shabarova Z.A., Bhagwat A.S.
Nucleic Acids Research , 1993
92.
5-Fluorocytosine in DNA is a mechanism-based inhibitor of HhaI methylase
Osterman D.G., DePillis G.D., Wu J.C., Matsuda A., Santi D.V.
Biochemistry , 1988
96.
96
L. M. Vorob'eva
Biokhimiya , 1958
98.
5(α-Bromoacetyl)-2′-deoxyuridine 5′-phosphate: A mechanism based affinity label for thymidylate synthetase
Brouillette C.B., Chang C.T., Mertes M.P.
Biochemical and Biophysical Research Communications , 1979
101.
Protein-DNA conjugates produced by UV irradiation and their use as probes for hybridization
Czichos J., Köhler M., Reckmann B., Renz M.
Nucleic Acids Research , 1989
102.
Laser cross-linking of proteins to nucleic acids. I. Examining physical parameters of protein-nucleic acid complexes
Hockensmith J.W., Kubasek W.L., Vorachek W.R., von Hippel P.H.
Journal of Biological Chemistry , 1993
103.
Laser cross-linking of proteins to nucleic acids. II. Interactions of the bacteriophage T4 DNA replication polymerase accessory proteins complex with DNA
Hockensmith J.W., Kubasek W.L., Evertsz E.M., Mesner L.D., von Hippel P.H.
Journal of Biological Chemistry , 1993
105.
105
F. F. Litvin
Dokl. Akad. Nauk SSSR , 1958
106.
[27] The cyanogen bromide reaction
Gross E.
Methods in Enzymology , 1967
107.
An examination of conditions for the cleavage of polypeptide chains with cyanogen bromide: application to catalase.
Schroeder W.A., Shelton J.B., Shelton J.R.
Archives of Biochemistry and Biophysics , 1969
108.
The preparation and enzymatic hydrolysis of reduced and S-carboxymethylated proteins.
Crestfield A.M., Moore S., Stein W.H.
Journal of Biological Chemistry , 1963
109.
109
F. Ficher
Bull. Soc. chim. France (4) , 1916
110.
Micropreparative procedures for high sensitivity sequencing of peptides and proteins.
Simpson R.J., Moritz R.L., Begg G.S., Rubira M.R., Nice E.C.
Analytical Biochemistry , 1989
111.
111
M. Calvin
1956