Home / Articles / Physicochemical and nanotechnological approaches to the design of 'rigid' spatial structures of DNA

Physicochemical and nanotechnological approaches to the design of 'rigid' spatial structures of DNA

Yurii Mikhailovich Evdokimov 1
Yurii Mikhailovich Evdokimov
, 
Victor Ivanovich Salyanov 1
Victor Ivanovich Salyanov
, 
Sergey Gennad'evich Skuridin 1
Sergey Gennad'evich Skuridin
, 
Eleonora Vladimirovna Shtykova
, 
Nikolai Grigor'evich Khlebtsov
, 
Efim Iosifovich Kats 4
Efim Iosifovich Kats
1 Engelhardt Institute of Molecular Biology, Russian Academy of Sciences
2 Institute of Cristallography Russian Academy of Sciences, Moscow
3 Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, Saratov
4 Landau Institute for Theoretical Physics, Russian Academy of Sciences
Published 30 November 2014
Communication , Volume 84, Issue 1, 27-42
8
Share
Cite this
GOST
 | 
Cite this
GOST
Evdokimov Y. M. et al. Physicochemical and nanotechnological approaches to the design of 'rigid' spatial structures of DNA // Russian Chemical Reviews. 2015. Vol. 84. No. 1. pp. 27-42.
GOST all authors (up to 50)
Evdokimov Y. M., Salyanov V. I., Skuridin S. G., Shtykova E. V., Khlebtsov N. G., Kats E. I. Physicochemical and nanotechnological approaches to the design of 'rigid' spatial structures of DNA // Russian Chemical Reviews. 2015. Vol. 84. No. 1. pp. 27-42.
RIS
 | 
Cite this
RIS
TY - JOUR
DO - 10.1070/RCR4454
UR - https://rcr.colab.ws/publications/10.1070/RCR4454
TI - Physicochemical and nanotechnological approaches to the design of 'rigid' spatial structures of DNA
T2 - Russian Chemical Reviews
AU - Evdokimov, Yurii Mikhailovich
AU - Salyanov, Victor Ivanovich
AU - Skuridin, Sergey Gennad'evich
AU - Shtykova, Eleonora Vladimirovna
AU - Khlebtsov, Nikolai Grigor'evich
AU - Kats, Efim Iosifovich
PY - 2015
DA - 2014/11/30
PB - ANO Editorial Board of the journal Uspekhi Khimii
SP - 27-42
IS - 1
VL - 84
ER -
BibTex
 | 
Cite this
BibTex (up to 50 authors)
@article{2015_Evdokimov,
author = {Yurii Mikhailovich Evdokimov and Victor Ivanovich Salyanov and Sergey Gennad'evich Skuridin and Eleonora Vladimirovna Shtykova and Nikolai Grigor'evich Khlebtsov and Efim Iosifovich Kats},
title = {Physicochemical and nanotechnological approaches to the design of 'rigid' spatial structures of DNA},
journal = {Russian Chemical Reviews},
year = {2015},
volume = {84},
publisher = {ANO Editorial Board of the journal Uspekhi Khimii},
month = {Nov},
url = {https://rcr.colab.ws/publications/10.1070/RCR4454},
number = {1},
pages = {27--42},
doi = {10.1070/RCR4454}
}
MLA
Cite this
MLA
Evdokimov, Yurii Mikhailovich, et al. “Physicochemical and nanotechnological approaches to the design of 'rigid' spatial structures of DNA.” Russian Chemical Reviews, vol. 84, no. 1, Nov. 2015, pp. 27-42. https://rcr.colab.ws/publications/10.1070/RCR4454.
Views / Visits / Downloads
37 / 37 / 11

Abstract

This review focuses on physicochemical and nanotechnological approaches to the design of 'rigid' particles based on double-stranded DNA molecules. The physicochemical methods imply cross-linking of adjacent DNA molecules ordered in quasinematic layers of liquid-crystalline dispersion particles by synthetic nanobridges consisting of alternating molecules of an antibiotic (daunomycin) and divalent copper ions, as well as cross-linking of these molecules as a result of their salting-out in quasinematic layers of liquid-crystalline dispersion particles under the action of lanthanide cations. The nanotechnological approach is based on the insertion of gold nanoparticles into the free space between double-stranded DNA molecules that form quasinematic layers of liquid-crystalline dispersion particles. This gives rise to extended clusters of gold nanoparticles and is accompanied by an enhancement of the interaction between the DNA molecules through gold nanoparticles and by a decrease in the solubility of dispersion particles. These approaches produce integrated 'rigid' DNA-containing spatial structures, which are incompatible with the initial aqueous polymeric solutions and have unique properties.

The bibliography includes 116 references.

References

1.
Supramolecular DNA assembly
McLaughlin C.K., Hamblin G.D., Sleiman H.F.
Chemical Society Reviews , 2011
2.
2
A. A. Krasnovskii
Zhur. Fiz. Khim. , 1956
3.
DNA hydrogels: New functional soft materials
Okay O.
Journal of Polymer Science, Part B: Polymer Physics , 2011
5.
5
A. A. Krasnovskii
Dokl. Akad. Nauk SSSR , 1953
6.
10.1021/jp076135+
7.
Macroporous, responsive DNA cryogel beads
Orakdogen N., Karacan P., Okay O.
Reactive and Functional Polymers , 2011
8.
10.1021/la061412+
9.
Ethidium bromide binding to DNA cryogels
Karacan P., Okay O.
Reactive and Functional Polymers , 2013
10.
Structural nucleic acid nanotechnology: Liquid-crystalline approach
Yevdokimov Y.M., Salyanov V.I., Katz E.I., Skuridin S.G.
Biophysics (Russian Federation) , 2013
11.
11
T. T. Bannister
Diss. Abstr. , 1959
12.
12
V. B. Evstigneev
Dokl. Akad. Nauk SSSR , 1950
13.
13
V. B. Evstigneev
Dokl. Akad. Nauk SSSR , 1954
15.
Yevdokimov Y.M., Salyanov V.I., Semenov S.V., Skuridin S.G.
2011
16.
16
A. A. Krasnovskii
Dokl. Akad. Nauk SSSR , 1949
17.
17
V. B. Evstigneev
Dokl. Akad. Nauk SSSR , 1958
18.
Soft matter under osmotic stress
Leonard M., Hong H., Easwar N., Strey H.H.
Polymer , 2001
19.
DNA Cholesteric Pitch as a Function of Density and Ionic Strength
Stanley C.B., Hong H., Strey H.H.
Biophysical Journal , 2005
20.
20
A. A. Krasnovskii
Dokl. Akad. Nauk SSSR , 1954
22.
Structural nanotechnology of nucleic acids: a liquid-crystalline approach
23.
Adjustable ‘cross-linking’ of neighboring DNA molecules in liquid-crystalline dispersions through (daunomycin-copper) polymeric chelate complexes
25.
25
G. W. Robinson
J. Chem. Phys. , 1955
26.
Nanoconstructions based on double-stranded nucleic acids.
Yevdokimov Y.M., Skuridin S.G., Nechipurenko Y.D., Zakharov M.A., Salyanov V.I., Kurnosov A.A., Kuznetsov V.D., Nikiforov V.N.
International Journal of Biological Macromolecules , 2005
27.
Nanotechnology and Nucleic Acids
Yevdokimov Y.M., Sytchev V.V.
The Open Nanoscience Journal , 2007
28.
28
A. A. Krasnovskii
Dokl. Akad. Nauk SSSR , 1955
30.
Structural nanotechnology of nucleic acids: Designing “Liquid” and “Rigid” DNA nanoconstructions
Yevdokimov Y.M., Salyanov V.I., Shtykova E.V., Katz E.I., Khlebtsov N.G., Skuridin S.G.
Herald of the Russian Academy of Sciences , 2014
31.
Структурная нанотехнология нуклеиновых кислот: создание “жидких” и “твёрдых” наноконструкций ДНК
Евдокимов Ю.М., Салянов В.И., Штыкова Э.В., Кац Е.И., Хлебцов Н.Г., Скуридин С.Г.
Вестник Российской академии наук , 2014
32.
Particles of liquid–crystalline dispersions formed by (nucleic acid–rare earth element) complexes as a potential platform for neutron capture therapy
Yevdokimov Y.M., Salyanov V.I., Kondrashina O.V., Borshevsky V.I., Semenov S.V., Gasanov A.A., Reshetov I.V., Kuznetsov V.D., Nikiforov V.N., Akulinichev S.V., Mordovskoi M.V., Potashev S.I., Skorkin V.M.
International Journal of Biological Macromolecules , 2005
33.
A Transition in DNA Molecule's Spatial Ordering Due to Nano-Scale Structural Changes
Yevdokimov Y.M., Salyanov V.I., Shtykova E.V., Dembo K.A., Volkov V.V., Spirin P.V., Slusheva A.S., Prassolov V.S.
The Open Nanoscience Journal , 2008
35.
Novel Biomaterial for NCT - “Rigid” Particles of (DNA-gadolinium) Liquid-Crystalline Dispersions
Yevdokimov Y.M., Salyanov V.I., Akulinichev S.V., Skorkin V.M., Spirin P.V., Orlova N.N., Popenko V.I., Prassolov V.S.
Journal of Biomaterials and Nanobiotechnology , 2011
36.
Nanoparticles in Liquid Crystals: Synthesis, Self-Assembly, Defect Formation and Potential Applications
Hegmann T., Qi H., Marx V.M.
Journal of Inorganic and Organometallic Polymers and Materials , 2007
37.
Liquid-crystalline nanoparticles: Hybrid design and mesophase structures
Nealon G.L., Greget R., Dominguez C., Nagy Z.T., Guillon D., Gallani J., Donnio B.
Beilstein Journal of Organic Chemistry , 2012
38.
Nanoparticles in liquid crystals and liquid crystalline nanoparticles.
Stamatoiu O., Mirzaei J., Feng X., Hegmann T.
Topics in Current Chemistry , 2011
40.
Organizing Carbon Nanotubes with Liquid Crystals
Lynch M.D., Patrick D.L.
Nano Letters , 2002
41.
Aligning and Reorienting Carbon Nanotubes with Nematic Liquid Crystals
Dierking I., Scalia G., Morales P., LeClere D.
Advanced Materials , 2004
42.
Effect of carbon nanotubes on phase transitions of nematic liquid crystals
Duran H., Gazdecki B., Yamashita A., Kyu T.
Liquid Crystals , 2005
43.
Liquid crystal–carbon nanotube dispersions
Dierking I., Scalia G., Morales P.
Journal of Applied Physics , 2005
44.
Carbon nanotubes in liquid crystals
Lagerwall J.P., Scalia G.
Journal of Materials Chemistry A , 2008
45.
45
W. Hendrich
Roczniki Chemii , 1958
46.
Dendronized Ferromagnetic Gold Nanoparticles Self‐Organized in a Thermotropic Cubic Phase
Donnio B., García-Vázquez P., Gallani J.-., Guillon D., Terazzi E.
Advanced Materials , 2007
50.
Alloy hardening of a smectic A liquid crystal doped with gold nanoparticles
Oswald P., Milette J., Relaix S., Reven L., Dequidt A., Lejcek L.
Europhysics Letters , 2013
51.
Effect of director distortions on morphologies of phase separation in liquid crystals
Voloschenko D., Pishnyak O.P., Shiyanovskii S.V., Lavrentovich O.D.
Physical Review E , 2002
52.
Liquid crystal–gold nanoparticle composites
Qi H., Hegmann T.
Liquid Crystals Today , 2011
53.
Liquid Crystals of DNA-Stabilized Carbon Nanotubes
Badaire S., Zakri C., Maugey M., Derré A., Barisci J.N., Wallace G., Poulin P.
Advanced Materials , 2005
55.
Effect of gold nanoparticles on DNA package in model systems
Skuridin S.G., Dubinskaya V.A., Rudoy V.M., Dement’eva O.V., Zakhidov S.T., Marshak T.L., Kuz’min V.A., Popenko V.I., Evdokimov Y.M.
Doklady Biochemistry and Biophysics , 2010
56.
56
T. Iasui
Bull. Chem. Soc. Japan. , 1935
57.
A Dual Effect of Au-Nanoparticles on Nucleic Acid Cholesteric Liquid-Crystalline Particles
Yevdokimov Y.M., Skuridin S.G., Salyanov V.I., Popenko V.I., Rudoy V.M., Dement′eva O.V., Shtykova E.V.
Journal of Biomaterials and Nanobiotechnology , 2011
59.
59
H. Linshitz
"Research in Photosynthesis" , 1957
61.
The Effects of Nanomaterials as Endocrine Disruptors
Iavicoli I., Fontana L., Leso V., Bergamaschi A.
International Journal of Molecular Sciences , 2013
62.
Reprotoxicity of gold, silver, and gold–silver alloy nanoparticles on mammalian gametes
Tiedemann D., Taylor U., Rehbock C., Jakobi J., Klein S., Kues W.A., Barcikowski S., Rath D.
The Analyst , 2014
63.
Bovine sperm chromatin is not protected from the effects of ultrasmall gold nanoparticles
Zakhidov S.T., Pavlyuchenkova S.M., Samoylov A.V., Mudzhiri N.M., Marshak T.L., Rudoy V.M., Dement’eva O.V., Zelenina I.A., Skuridin S.G., Yevdokimov Y.M.
Biology Bulletin , 2013
64.
64
Chem. Zentr. II , 1931
65.
Uptake of engineered gold nanoparticles into mammalian cells.
Dykman L.A., Khlebtsov N.G.
Chemical Reviews , 2013
66.
A DNA-based method for rationally assembling nanoparticles into macroscopic materials
Mirkin C.A., Letsinger R.L., Mucic R.C., Storhoff J.J.
Nature , 1996
67.
Organization of 'nanocrystal molecules' using DNA
Alivisatos A.P., Johnsson K.P., Peng X., Wilson T.E., Loweth C.J., Bruchez M.P., Schultz P.G.
Nature , 1996
68.
10.1021/ja952233+
69.
Strategies for Organizing Nanoparticles into Aggregate Structures and Functional Materials
Storhoff J.J., Mucic R.C., Mirkin C.A.
Journal of Cluster Science , 1997
70.
10.1002/1521-3773(20001103)39:21<3845::AID-ANIE3845>3.0.CO;2-O
71.
What Controls the Optical Properties of DNA-Linked Gold Nanoparticle Assemblies?
Storhoff J.J., Lazarides A.A., Mucic R.C., Mirkin C.A., Letsinger R.L., Schatz G.C.
Journal of the American Chemical Society , 2000
72.
DNA-mediated electrostatic assembly of gold nanoparticles into linear arrays by a simple drop-coating procedure
Sastry M., Kumar A., Datar S., Dharmadhikari C.V., Ganesh K.N.
Applied Physics Letters , 2001
73.
10.1002/1521-4095(200103)13:5<341::AID-ADMA341>3.0.CO;2-X
75.
The Structural Characterization of Oligonucleotide-Modified Gold Nanoparticle Networks Formed by DNA Hybridization
Park S., Lazarides A.A., Storhoff J.J., Pesce L., Mirkin C.A.
Journal of Physical Chemistry B , 2004
76.
76
A. N. Terenin
"Fotokhimiya Krasitelei" (The Photochemistry of Dyes) , 1947
78.
DNA-nanoparticle superlattices formed from anisotropic building blocks
Jones M.R., Macfarlane R.J., Lee B., Zhang J., Young K.L., Senesi A.J., Mirkin C.A.
Nature Materials , 2010
81.
Colorimetric detection of DNA sequences based on electrostatic interactions with unmodified gold nanoparticles
Li H., Rothberg L.
Proceedings of the National Academy of Sciences of the United States of America , 2004
82.
Thermal Desorption Behavior and Binding Properties of DNA Bases and Nucleosides on Gold
Demers L.M., Östblom M., Zhang H., Jang N., Liedberg B., Mirkin C.A.
Journal of the American Chemical Society , 2002
83.
A study of the nucleation and growth processes in the synthesis of colloidal gold
Turkevich J., Stevenson P.C., Hillier J.
Discussions of the Faraday Society , 1951
85.
85
A. A. Krasnovskii
Dokl. Akad. Nauk SSSR , 1947
87.
Size-Dependent Cytotoxicity of Gold Nanoparticles
Pan Y., Neuss S., Leifert A., Fischler M., Wen F., Simon U., Schmid G., Brandau W., Jahnen-Dechent W.
Small , 2007
89.
The Surface Chemistry of Au Colloids and Their Interactions with Functional Amino Acids
Zhong Z., Patskovskyy S., Bouvrette P., Luong J.H., Gedanken A.
Journal of Physical Chemistry B , 2004
91.
Effect of pH on the Interaction of Gold Nanoparticles with DNA and Application in the Detection of Human p53 Gene Mutation
Sun L., Zhang Z., Wang S., Zhang J., Li H., Ren L., Weng J., Zhang Q.
Nanoscale Research Letters , 2008
93.
Molecules on gold
Sändig N., Zerbetto F.
Chemical Communications , 2010
95.
Toxic Potential of Materials at the Nanolevel
Nel A., Xia T., Mädler L., Li N.
Science , 2006
98.
Reversible phase transfer and fractionation of Au nanoparticles by pH change
Imura Y., Morita C., Endo H., Kondo T., Kawai T.
Chemical Communications , 2010
99.
Self‐Assembly and Shape Morphology of Liquid Crystalline Gold Metamaterials
Draper M., Saez I.M., Cowling S.J., Gai P., Heinrich B., Donnio B., Guillon D., Goodby J.W.
Advanced Functional Materials , 2011
100.
Conformation of Oligonucleotides Attached to Gold Nanocrystals Probed by Gel Electrophoresis
Parak W.J., Pellegrino T., Micheel C.M., Gerion D., Williams S.C., Alivisatos A.P.
Nano Letters , 2002
102.
10.1021/cr030698+
104.
Cellular uptake and toxicity of Au55 clusters.
Tsoli M., Kuhn H., Brandau W., Esche H., Schmid G.
Small , 2005
106.
A Fluorescence-Based Method for Determining the Surface Coverage and Hybridization Efficiency of Thiol-Capped Oligonucleotides Bound to Gold Thin Films and Nanoparticles
Demers L.M., Mirkin C.A., Mucic R.C., Reynolds R.A., Letsinger R.L., Elghanian R., Viswanadham G.
Analytical Chemistry , 2000
108.
Nonspecific and Thiol-Specific Binding of DNA to Gold Nanoparticles
Sandström P., Boncheva M., Åkerman B.
Langmuir , 2003
109.
109
F. Ficher
Bull. Soc. chim. France (4) , 1916
110.
Magnetic nanoparticles–DNA interactions: design and applications of nanobiohybrid systems
111.
Effective interaction between charged nanoparticles and DNA
Paillusson F., Dahirel V., Jardat M., Victor J., Barbi M.
Physical Chemistry Chemical Physics , 2011
112.
A new nanobiomaterial: particles of liquid-crystalline DNA dispersions with embedded clusters of gold nanoparticles
Yevdokimov Y.M., Skuridin S.G., Salyanov V.I., Popenko V.I., Shtykova E.V., Dadinova L.A., Volkov V.V., Khlebtsov N.G., Khlebtsov B.N., Kats E.I.
Nanotechnologies in Russia , 2014
113.
113
H. Blum
"Photodynamic Action and Diseases caused Light" , 1940
114.
T-matrix method in plasmonics: An overview
Khlebtsov N.G.
Journal of Quantitative Spectroscopy and Radiative Transfer , 2013
115.
115
A. A. Krasnovskii
Dokl. Akad. Nauk SSSR , 1957
116.
Optical amplification of photothermal therapy with gold nanoparticles and nanoclusters
Khlebtsov B., Zharov V., Melnikov A., Tuchin V., Khlebtsov N.
Nanotechnology , 2006
117.
The kinetics of precipitation from supersaturated solid solutions
Lifshitz I.M., Slyozov V.V.
Journal of Physics and Chemistry of Solids , 1961
118.
118
V. M. Rodionov
Zhur. Obshch. Khim. , 1935
119.
119
V. V. Levchenko
Zhur. Obshch. Khim. , 1947
120.
Small-angle-scattering-data treatment by the regularization method
Svergun D.I., Semenyuk A.V., Feigin L.A.
Acta Crystallographica Section A Foundations of Crystallography , 1988
121.
Gold-Cluster Degradation by the Transition of B-DNA into A-DNA and the Formation of Nanowires
Liu Y., Meyer-Zaika W., Franzka S., Schmid G., Tsoli M., Kuhn H.
Angewandte Chemie - International Edition , 2003
122.
Effect of gold nanoparticles on spermatozoa: the first world report.
Wiwanitkit V., Sereemaspun A., Rojanathanes R.
Fertility and Sterility , 2009