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Promising approaches to crystallization of macromolecules suppressing the convective mass transport to the growing crystal

Konstantin Mikhailovich Boyko 1, 2
Konstantin Mikhailovich Boyko
, 
Vladimir Olegovich Popov 1, 2
Vladimir Olegovich Popov
, 
Mikhail Valentinovich Koval'chuk 2, 3
Mikhail Valentinovich Koval'chuk
1 A.N. Bach Institute of Biochemistry, Russian Academy of Sciences, Moscow
2 National Research Centre "Kurchatov Institute", Moscow
3 Institute of Cristallography Russian Academy of Sciences, Moscow
10.1070/RCR4557
Published 30 November 2014
Communication , Volume 84, Issue 8, 853-859
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Boyko K. M., Popov V. O., Koval'chuk M. V. Promising approaches to crystallization of macromolecules suppressing the convective mass transport to the growing crystal // Russian Chemical Reviews. 2015. Vol. 84. No. 8. pp. 853-859.
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Boyko K. M., Popov V. O., Koval'chuk M. V. Promising approaches to crystallization of macromolecules suppressing the convective mass transport to the growing crystal // Russian Chemical Reviews. 2015. Vol. 84. No. 8. pp. 853-859.
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TY - JOUR
DO - 10.1070/RCR4557
UR - https://rcr.colab.ws/publications/10.1070/RCR4557
TI - Promising approaches to crystallization of macromolecules suppressing the convective mass transport to the growing crystal
T2 - Russian Chemical Reviews
AU - Boyko, Konstantin Mikhailovich
AU - Popov, Vladimir Olegovich
AU - Koval'chuk, Mikhail Valentinovich
PY - 2015
DA - 2014/11/30
PB - ANO Editorial Board of the journal Uspekhi Khimii
SP - 853-859
IS - 8
VL - 84
ER -
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@article{2015_Boyko,
author = {Konstantin Mikhailovich Boyko and Vladimir Olegovich Popov and Mikhail Valentinovich Koval'chuk},
title = {Promising approaches to crystallization of macromolecules suppressing the convective mass transport to the growing crystal},
journal = {Russian Chemical Reviews},
year = {2015},
volume = {84},
publisher = {ANO Editorial Board of the journal Uspekhi Khimii},
month = {Nov},
url = {https://rcr.colab.ws/publications/10.1070/RCR4557},
number = {8},
pages = {853--859},
doi = {10.1070/RCR4557}
}
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Boyko, Konstantin Mikhailovich, et al. “Promising approaches to crystallization of macromolecules suppressing the convective mass transport to the growing crystal.” Russian Chemical Reviews, vol. 84, no. 8, Nov. 2015, pp. 853-859. https://rcr.colab.ws/publications/10.1070/RCR4557.
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Abstract

Conditions of mass transport to growing crystals are important factors that have an impact on the size and quality of macromolecular crystals. The mass transport occurs {\it via} two mechanisms~-- by diffusion and convection. The crystal quality can be influenced by changing (either suppressing or enhancing) the convective mass transport. The review gives an overview and analysis of the published data on different methods of macromolecular crystallization providing the suppression of convective mass transport to growing crystals in order to improve the crystal quality.

The bibliography includes 91~references.

References

1.
New Strategies for Protein Crystal Growth
Wiencek J. .
Annual Review of Biomedical Engineering , 1999
2.
Structure and function of serotonin G protein-coupled receptors
McCorvy J.D., Roth B.L.
Pharmacology and Therapeutics , 2015
4.
Introduction to protein crystallization
McPherson A., Gavira J.A.
Acta Crystallographica Section F:Structural Biology Communications , 2013
5.
5
A. A. Krasnovskii
Dokl. Akad. Nauk SSSR , 1953
7.
7
E. Rabinowitch
"Photosynthesis" , 1956
8.
The role of transport phenomena in protein crystal growth
Grant M.L., Saville D.A.
Journal of Crystal Growth , 1991
9.
High-Throughput Protein Crystallization
Chayen N.E.
Advances in Protein Chemistry and Structural Biology , 2009
10.
10
T. A. Kryukova
"Polyaro-graficheskii Analiz" (Polarographic Analysis) , 1959
12.
Counterdiffusion methods applied to protein crystallization
Otálora F., Gavira J.A., Ng J.D., García-Ruiz J.M.
Progress in Biophysics and Molecular Biology , 2009
13.
13
V. B. Evstigneev
Dokl. Akad. Nauk SSSR , 1954
15.
Nucleation
Vekilov P.G.
Crystal Growth and Design , 2010
16.
PROTEIN CRYSTALLIZATION
Durbin S.D., Feher G.
Annual Review of Physical Chemistry , 1996
17.
Mechanisms of Protein Crystal Growth: An Atomic Force Microscopy Study of Canavalin Crystallization
Land T.A., Malkin A.J., Kuznetsov Y.G., McPherson A., De Yoreo J.J.
Physical Review Letters , 1995
18.
[24] Formation of large crystals
Zeppezauer M.
Methods in Enzymology , 1971
21.
Investigations on protein crystal growth by the gel acupuncture method
García-Ruiz J.M., Moreno A.
Acta Crystallographica Section D Biological Crystallography , 1994
22.
An automated system for micro-batch protein crystallization and screening
Chayen N.E., Shaw Stewart P.D., Maeder D.L., Blow D.M.
Journal of Applied Crystallography , 1990
23.
23
N. V. Vostrilova
Dokl. Akad. Nauk Uzbek. SSR , 1958
24.
From gene to structure: The protein factory of the NBICS Centre of Kurchatov Institute
Boyko K.M., Lipkin A.V., Popov V.O., Kovalchuk M.V.
Crystallography Reports , 2013
25.
От гена к структуре. Белковая фабрика НБИКС-центра Курчатовского института
Бойко К.М., Липкин А.В., Попов В.О., Ковальчук М.В.
Кристаллография , 2013
26.
Effects of macromolecular impurities and of crystallization method on the quality of eubacterial aspartyl-tRNA synthetase crystals
Moreno A., Théobald-Dietrich A., Lorber B., Sauter C., Giegé R.
Acta Crystallographica Section D Biological Crystallography , 2005
27.
Nucleation and Crystallization of Globular Proteins: What we Know and What is Missing
Rosenberger F., Vekilov P.G., Muschol M., Thomas B.R.
Journal of Crystal Growth , 1996
28.
Analysis of the influence of coupled diffusion on transport in protein crystal growth for different gravity levels
Castagnolo D., Vergara A., Paduano L., Sartorio R., Annunziata O.
Acta Crystallographica Section D Biological Crystallography , 2002
29.
29
A. A. Krasnovskii
Dokl. Akad. Nauk SSSR , 1951
31.
Recent results and new hardware developments for protein crystal growth in microgravity
DeLucas L.J., Long M.M., Moore K.M., Rosenblum W.M., Bray T.L., Smith C., Carson M., Narayana S.V., Harrington M.D., Carter D., Clark A.D., Nanni R.G., Ding J., Jacobo-Molina A., Kamer G., et. al.
Journal of Crystal Growth , 1994
32.
Protein crystal growth results for shuttle flights STS-26 and STS-29
DeLucas L.J., Smith C.D., Smith W., Vijay-Kumar S., Senadhi S.E., Ealick S.E., Carter D.C., Snyder R.S., Weber P.C., Salemme F.R., Ohlendorf D.H., Einspahr H.M., Clancy L.L., Navia M.A., McKeever B.M., et. al.
Journal of Crystal Growth , 1991
33.
33
M. B. Neiman
"Issledovanie Mekhanizma Okisleniya Butana" (Research on the Mechanism of the Oxidation of Butane) , 1939
34.
Extracting trends from two decades of microgravity macromolecular crystallization history
Judge R.A., Snell E.H., van der Woerd M.J.
Acta Crystallographica Section D Biological Crystallography , 2005
35.
Effects of Microheterogeneity in Hen Egg-White Lysozyme Crystallization
Thomas B.R., Vekilov P.G., Rosenberger F.
Acta Crystallographica Section D Biological Crystallography , 1998
36.
Direct AFM observations of impurity effects on a lysozyme crystal
Nakada T., Sazaki G., Miyashita S., Durbin S.D., Komatsu H.
Journal of Crystal Growth , 1999
37.
The effects of microgravity on protein crystallization: evidence for concentration gradients around growing crystals
McPherson A., J. Malkin A., Kuznetsov Y.G., Koszelak S., Wells M., Jenkins G., Howard J., Lawson G.
Journal of Crystal Growth , 1999
38.
The protein as a variable in protein crystallization
Dale G.E., Oefner C., D’Arcy A.
Journal of Structural Biology , 2003
39.
Lower Incorporation of Impurities in Ferritin Crystals by Suppression of Convection:  Modeling Results
Lin H., Petsev D.N., Yau S.-., Thomas B.R., Vekilov P.G.
Crystal Growth and Design , 2000
40.
Crystallization of proteins under microgravity
Erdmann V.A., Lippmann C., Betzel C., Dauter Z., Wilson K., Hilgenfeld R., Hoven J., Liesum A., Saenger W., Müller-Fahrnow A., Hinrichs W., Düvel M., Schulz G.E., Müller C.W., Wittmann H.G., et. al.
FEBS Letters , 1989
41.
Crystal growth in gels: Principle and applications
Robert M.C., Lefaucheux F.
Journal of Crystal Growth , 1988
42.
Agarose as crystallization media for proteins
Garcı́a-Ruiz J.M., Novella M.L., Moreno R., Gavira J.A.
Journal of Crystal Growth , 2001
43.
43
N. Bunge
Ber. Deutsch. Chem. Ges. , 1870
44.
Growth of Protein Crystals in Hydrogels Prevents Osmotic Shock
Sugiyama S., Maruyama M., Sazaki G., Hirose M., Adachi H., Takano K., Murakami S., Inoue T., Mori Y., Matsumura H.
Journal of the American Chemical Society , 2012
45.
Towards atomic resolution with crystals grown in gel: The case of thaumatin seen at room temperature
Sauter C., Lorber B., Giegé R.
Proteins: Structure, Function and Genetics , 2002
46.
Agarose as crystallisation media for proteins II: Trapping of gel fibres into the crystals
Gavira J.A., García-Ruiz J.M.
Acta Crystallographica Section D Biological Crystallography , 2002
47.
Approach for growth of high-quality and large protein crystals
Matsumura H., Sugiyama S., Hirose M., Kakinouchi K., Maruyama M., Murai R., Adachi H., Takano K., Murakami S., Mori Y., Inoue T.
Journal of Synchrotron Radiation , 2010
48.
48
A. A. Krasnovskii
Dokl. Akad. Nauk SSSR , 1955
49.
49
A. A. Krasnovskii
Biofizika , 1958
50.
Crystallization within agarose gel in microgravity improves the quality of thaumatin crystals
Lorber B., Sauter C., Robert M.C., Capelle B., Giegé R.
Acta Crystallographica Section D Biological Crystallography , 1999
51.
Simple Geometry for Diffusion Limited Protein Crystal Growth: Harnessing Gravity to Suppress Convection
Poodt P.W., Heijna M.C., Schouten A., Gros P., van Enckevort W.J., Vlieg E.
Crystal Growth and Design , 2008
52.
High Resolution Protein Crystals Using an Efficient Convection-Free Geometry
Adawy A., Rebuffet E., Törnroth-Horsefield S., de Grip W.J., van Enckevort W.J., Vlieg E.
Crystal Growth and Design , 2012
55.
Microfluidics: Fluid physics at the nanoliter scale
Squires T.M., Quake S.R.
Reviews of Modern Physics , 2005
56.
56
T. Iasui
Bull. Chem. Soc. Japan. , 1935
57.
57
R. Livingston
"Research in Photosynthesis" , 1957
58.
From Macrofluidics to Microfluidics for the Crystallization of Biological Macromolecules
Sauter C., Dhouib K., Lorber B.
Crystal Growth and Design , 2007
59.
Screening of Protein Crystallization Conditions on a Microfluidic Chip Using Nanoliter-Size Droplets
Zheng B., Roach L.S., Ismagilov R.F.
Journal of the American Chemical Society , 2003
60.
Microfluidic chips for the crystallization of biomacromolecules by counter-diffusion and on-chip crystal X-ray analysis
Dhouib K., Khan Malek C., Pfleging W., Gauthier-Manuel B., Duffait R., Thuillier G., Ferrigno R., Jacquamet L., Ohana J., Ferrer J., Théobald-Dietrich A., Giegé R., Lorber B., Sauter C.
Lab on a Chip , 2009
61.
In situX-ray analysis of protein crystals in low-birefringent and X-ray transmissive plastic microchannels
Ng J.D., Clark P.J., Stevens R.C., Kuhn P.
Acta Crystallographica Section D Biological Crystallography , 2008
62.
Design and application of a microfluidic device for protein crystallization using an evaporation-based crystallization technique
Yu Y., Wang X., Oberthür D., Meyer A., Perbandt M., Duan L., Kang Q.
Journal of Applied Crystallography , 2011
65.
65
A. A. Krasnovskii
Biofizika , 1959
66.
66
V. B. Evstigneev
Dokl. Akad. Nauk SSSR , 1950
68.
Macromolecular crystallization in microgravity
Snell E.H., Helliwell J.R.
Reports on Progress in Physics , 2005
69.
69
B. Commoner
1958
70.
NH3-dependent NAD+synthetase fromBacillus subtilisat 1 Å resolution
Symersky J., Devedjiev Y., Moore K., Brouillette C., DeLucas L.
Acta Crystallographica Section D Biological Crystallography , 2002
71.
From conventional crystallization to better crystals from space: a review on pilot crystallogenesis studies with aspartyl-tRNA synthetases
Lorber B., Théobald-Dietrich A., Charron C., Sauter C., Ng J.D., Zhu D.-., Giegé R.
Acta Crystallographica Section D Biological Crystallography , 2002
72.
An Overview of Biological Macromolecule Crystallization
Russo Krauss I., Merlino A., Vergara A., Sica F.
International Journal of Molecular Sciences , 2013
73.
Crystallisation under microgravity of mistletoe lectin I from Viscum album with adenine monophosphate and the crystal structure at 1.9 Å resolution
Krauspenhaar R., Rypniewski W., Kalkura N., Moore K., DeLucas L., Stoeva S., Mikhailov A., Voelter W., Betzel C.
Acta Crystallographica Section D Biological Crystallography , 2002
74.
Analysis of the effect of microgravity on protein crystal quality: the case of a myoglobin triple mutant
Miele A.E., Federici L., Sciara G., Draghi F., Brunori M., Vallone B.
Acta Crystallographica Section D Biological Crystallography , 2003
75.
Structure of a high-resolution crystal form of human triosephosphate isomerase: improvement of crystals using the gel-tube method
Kinoshita T., Maruki R., Warizaya M., Nakajima H., Nishimura S.
Acta Crystallographica Section F Structural Biology and Crystallization Communications , 2005
76.
A simplified counter diffusion method combined with a 1D simulation program for optimizing crystallization conditions.
Tanaka H., Inaka K., Sugiyama S., Takahashi S., Sano S., Sato M., Yoshitomi S.
Journal of Synchrotron Radiation , 2003
77.
Comparative Analysis of Thaumatin Crystals Grown on Earth and in Microgravity
Ng J.D., Lorber B., Giegé R., Koszelak S., Day J., Greenwood A., McPherson A.
Acta Crystallographica Section D Biological Crystallography , 1997
78.
Comparative analysis of space-grown and earth-grown crystals of an aminoacyl-tRNA synthetase: space-grown crystals are more useful for structural determination
Ng J.D., Sauter C., Lorber B., Kirkland N., Arnez J., Giegé R.
Acta Crystallographica Section D Biological Crystallography , 2002
79.
Granada Crystallisation Box: a new device for protein crystallisation by counter-diffusion techniques
Garcia-Ruíz J.M., Gonzalez-Ramirez L.A., Gavira J.A., Otálora F.
Acta Crystallographica Section D Biological Crystallography , 2002
81.
Protein crystal growth on the Russian segment of the International Space Station
Smirnova E.A., Kislitsyn Y.A., Sosfenov N.I., Lyashenko A.V., Popov A.N., Baĭdus’ A.N., Timofeev V.I., Kuranova I.P.
Crystallography Reports , 2009
82.
82
G. P. Brin
Biokhimiya , 1957
83.
High-quality crystals of human haematopoietic prostaglandin D synthase with novel inhibitors
Takahashi S., Tsurumura T., Aritake K., Furubayashi N., Sato M., Yamanaka M., Hirota E., Sano S., Kobayashi T., Tanaka T., Inaka K., Tanaka H., Urade Y.
Acta Crystallographica Section F Structural Biology and Crystallization Communications , 2010
84.
Crystal growth of phosphopantetheine adenylyltransferase, carboxypeptidase t, and thymidine phosphorylase on the international space station by the capillary counter-diffusion method
Kuranova I.P., Smirnova E.A., Abramchik Y.A., Chupova L.A., Esipov R.S., Akparov V.K., Timofeev V.I., Kovalchuk M.V.
Crystallography Reports , 2011
85.
85
A. A. Krasnovskii
Dokl. Akad. Nauk SSSR , 1947
86.
Microgravity and Macromolecular Crystallography
Kundrot C.E., Judge R.A., Pusey M.L., Snell E.H.
Crystal Growth and Design , 2000
87.
X-ray investigation of gene-engineered human insulin crystallized from a solution containing polysialic acid
Timofeev V.I., Chuprov-Netochin R.N., Samigina V.R., Bezuglov V.V., Miroshnikov K.A., Kuranova I.P.
Acta Crystallographica Section F Structural Biology and Crystallization Communications , 2010
88.
Crystallization of uridine phosphorylase fromShewanella oneidensisMR-1 in the laboratory and under microgravity and preliminary X-ray diffraction analysis
Safonova T.N., Mordkovich N.N., Polyakov K.M., Manuvera V.A., Veiko V.P., Popov V.O.
Acta Crystallographica Section F Structural Biology and Crystallization Communications , 2012
89.
X-ray study of the conformational changes in the molecule of phosphopantetheine adenylyltransferase fromMycobacterium tuberculosisduring the catalyzed reaction
Timofeev V., Smirnova E., Chupova L., Esipov R., Kuranova I.
Acta Crystallographica Section D Biological Crystallography , 2012
91.
91
L. M. Vorob'eva
Biokhimiya , 1956
92.
Covalent modifications of the catalytic tyrosine in octahaem cytochromecnitrite reductase and their effect on the enzyme activity
Trofimov A.A., Polyakov K.M., Tikhonova T.V., Tikhonov A.V., Safonova T.N., Boyko K.M., Dorovatovskii P.V., Popov V.O.
Acta Crystallographica Section D Biological Crystallography , 2012
93.
Identification of the ligand in the structure of the protein with unknown function STM4435 from Salmonella typhimurium
Boyko K.M., Gorbacheva M.A., Rakitina T.V., Korzhenevsky D.A., Dorovatovsky P.V., Lipkin A.V., Popov V.O.
Doklady Biochemistry and Biophysics , 2014
94.
94
A. A. Krasnovskii
Fiziologiya Rastenii , 1957
95.
JAXA protein crystallization in space: ongoing improvements for growing high-quality crystals
Takahashi S., Ohta K., Furubayashi N., Yan B., Koga M., Wada Y., Yamada M., Inaka K., Tanaka H., Miyoshi H., Kobayashi T., Kamigaichi S.
Journal of Synchrotron Radiation , 2013
96.
Recombinant formate dehydrogenase from Arabidopsis thaliana: Preparation, crystal growth in microgravity, and preliminary X-ray diffraction study
Shabalin I.G., Serov A.E., Skirgello O.E., Timofeev V.I., Samygina V.R., Popov V.O., Tishkov V.I., Kuranova I.P.
Crystallography Reports , 2010
97.
97
A. N. Terenin
Dokl. Akad. Nauk SSSR , 1952
98.
ATP-dependent DNA ligase fromThermococcussp. 1519 displays a new arrangement of the OB-fold domain
Petrova T., Bezsudnova E.Y., Boyko K.M., Mardanov A.V., Polyakov K.M., Volkov V.V., Kozin M., Ravin N.V., Shabalin I.G., Skryabin K.G., Stekhanova T.N., Kovalchuk M.V., Popov V.O.
Acta Crystallographica Section F Structural Biology and Crystallization Communications , 2012