Home / Articles / BODIPY derivatives as fluorescent reporters of molecular activities in living cells

BODIPY derivatives as fluorescent reporters of molecular activities in living cells

Vladimir Ivanovich Martynov 1
Vladimir Ivanovich Martynov
, 
Alexey Aleksandrovich Pakhomov 1
Alexey Aleksandrovich Pakhomov
1 M. M. Shemyakin and Yu. A. Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Moscow
10.1070/RCR4985
Published 30 November 2020
Review , RCR4985, Volume 90, Issue 10, 1213-1262
44
Share
Cite this
GOST
 | 
Cite this
GOST
Copy cite
Martynov V. I., Pakhomov A. A. BODIPY derivatives as fluorescent reporters of molecular activities in living cells // Russian Chemical Reviews. 2020. Vol. 90. No. 10. pp. 1213-1262.
GOST all authors (up to 50)
Copy cite
Martynov V. I., Pakhomov A. A. BODIPY derivatives as fluorescent reporters of molecular activities in living cells // Russian Chemical Reviews. 2020. Vol. 90. No. 10. pp. 1213-1262.
RIS
 | 
Cite this
RIS
Copy cite
TY - JOUR
DO - 10.1070/RCR4985
UR - https://rcr.colab.ws/publications/10.1070/RCR4985
TI - BODIPY derivatives as fluorescent reporters of molecular activities in living cells
T2 - Russian Chemical Reviews
AU - Martynov, Vladimir Ivanovich
AU - Pakhomov, Alexey Aleksandrovich
PY - 2020
DA - 2020/11/30
PB - ANO Editorial Board of the journal Uspekhi Khimii
SP - 1213-1262
IS - 10
VL - 90
ER -
BibTex
 | 
Cite this
BibTex (up to 50 authors)
Copy cite
@article{2020_Martynov,
author = {Vladimir Ivanovich Martynov and Alexey Aleksandrovich Pakhomov},
title = {BODIPY derivatives as fluorescent reporters of molecular activities in living cells},
journal = {Russian Chemical Reviews},
year = {2020},
volume = {90},
publisher = {ANO Editorial Board of the journal Uspekhi Khimii},
month = {Nov},
url = {https://rcr.colab.ws/publications/10.1070/RCR4985},
number = {10},
pages = {1213--1262},
doi = {10.1070/RCR4985}
}
MLA
Cite this
MLA
Copy cite
Martynov, Vladimir Ivanovich, and Alexey Aleksandrovich Pakhomov. “BODIPY derivatives as fluorescent reporters of molecular activities in living cells.” Russian Chemical Reviews, vol. 90, no. 10, Nov. 2020, pp. 1213-1262. https://rcr.colab.ws/publications/10.1070/RCR4985.
Views / Visits / Downloads
41 / 41 / 13

Keywords

fluorescent dye; BODIPY; fluorescence microscopy; intracellular sensor

Abstract

Fluorescent compounds have become indispensable tools for imaging molecular activities in the living cell. 4,4-Difluoro-4-bora-3a,4a-diaza-$s$-indacene (BODIPY) is currently one of the most popular fluorescent reporters due to its unique photophysical properties. This review provides a general survey and presents a summary of recent advances in the development of new BODIPY-based cellular biomarkers and biosensors. The review starts with the consideration of the properties of BODIPY derivatives required for their application as cellular reporters. Then review provides examples of the design of sensors for different biologically important molecules, ions, membrane potential, temperature and viscosity defining the live cell status. Special attention is payed to BODPY-based phototransformable reporters.

The bibliography includes 339 references.

Funders

Russian Science Foundation
19-73-20194

References

1.
Fluorescent proteins from nonbioluminescent Anthozoa species
Matz M.V., Fradkov A.F., Labas Y.A., Savitsky A.P., Zaraisky A.G., Markelov M.L., Lukyanov S.A.
Nature Biotechnology , 1999
2.
rcr_90_10_1213_bib2
Baird
Proc. Natl. Acad. Sci. USA , 2000
3.
Structure of a red fluorescent protein fromZoanthus, zRFP574, reveals a novel chromophore
Pletneva N., Pletnev S., Tikhonova T., Popov V., Martynov V., Pletnev V.
Acta Crystallographica Section D Biological Crystallography , 2006
5.
A monomeric red fluorescent protein
Campbell R.E., Tour O., Palmer A.E., Steinbach P.A., Baird G.S., Zacharias D.A., Tsien R.Y.
Proceedings of the National Academy of Sciences of the United States of America , 2002
6.
Sensory effects of fluorescent organic dyes
Traven V.F., Cheptsov D.A.
Russian Chemical Reviews , 2020
8.
Advances in the chemistry of small molecule fluorescent probes.
Wysocki L.M., Lavis L.D.
Current Opinion in Chemical Biology , 2011
9.
Bright Building Blocks for Chemical Biology
Lavis L.D., Raines R.T.
ACS Chemical Biology , 2014
10.
Martynov V.I., Pakhomov A.A., Popova N.V., Deyev I.E., Petrenko A.G.
Acta Naturae , 2016
12.
Fluorescent indicators based on BODIPY
Boens N., Leen V., Dehaen W.
Chemical Society Reviews , 2012
13.
BODIPY-based probes for the fluorescence imaging of biomolecules in living cells.
Kowada T., Maeda H., Kikuchi K.
Chemical Society Reviews , 2015
14.
Reaction-based BODIPY probes for selective bio-imaging
Kolemen S., Akkaya E.U.
Coordination Chemistry Reviews , 2018
15.
Bioapplications of small molecule Aza-BODIPY: from rational structural design to in vivo investigations.
Shi Z., Han X., Hu W., Bai H., Peng B., Ji L., Fan Q., Li L., Huang W.
Chemical Society Reviews , 2020
16.
BODIPY-based macrocycles.
Qin Y., Liu X., Jia P., Xu L., Yang H.
Chemical Society Reviews , 2020
17.
rcr_90_10_1213_bib17
Wang
Dyes Pigm. , 2020
18.
BODIPY on Board of Sugars: A Short Enlightened Journey up to the Cells
Barattucci A., Campagna S., Papalia T., Galletta M., Santoro A., Puntoriero F., Bonaccorsi P.
ChemPhotoChem , 2020
21.
Recent Progress of BODIPY Dyes With Aggregation-Induced Emission
Liu Z., Jiang Z., Yan M., Wang X.
Frontiers in Chemistry , 2019
22.
Recent advances in the application of BODIPY in bioimaging and chemosensing
Kaur P., Singh K.
Journal of Materials Chemistry C , 2019
24.
Recent advances in the synthesis of [a]-benzo-fused BODIPY fluorophores
Jean-Gérard L., Vasseur W., Scherninski F., Andrioletti B.
Chemical Communications , 2018
25.
Rational design of boron dipyrromethene (BODIPY)-based photobleaching-resistant fluorophores applicable to a protein dynamics study.
Komatsu T., Oushiki D., Takeda A., Miyamura M., Ueno T., Terai T., Hanaoka K., Urano Y., Mineno T., Nagano T.
Chemical Communications , 2011
26.
Photoconversion of Bodipy-Labeled Lipid Analogues
Sezgin E., Chwastek G., Aydogan G., Levental I., Simons K., Schwille P.
ChemBioChem , 2013
27.
“Turn on” orange fluorescent probe based on styryl-BODIPY for detection of hypochlorite and its application in live cell imaging
Jantra S., Butta P., Jithavech P., Rojsitthisak P., Palaga T., Rashatasakhon P., Sukwattanasinitt M., Wacharasindhu S.
Dyes and Pigments , 2019
28.
BODIPY based fluorescent turn-on sensor for highly selective detection of HNO and the application in living cells
Zhao X., Gao C., Li N., Liu F., Huo S., Li J., Guan X., Yan N.
Tetrahedron Letters , 2019
29.
New BODIPY lipid probes for fluorescence studies of membranes
Boldyrev I.A., Zhai X., Momsen M.M., Brockman H.L., Brown R.E., Molotkovsky J.G.
Journal of Lipid Research , 2007
30.
High‐Efficiency FRET Processes in BODIPY‐Functionalized Quantum Dot Architectures
Panniello A., Trapani M., Cordaro M., Dibenedetto C.N., Tommasi R., Ingrosso C., Fanizza E., Grisorio R., Collini E., Agostiano A., Curri M.L., Castriciano M.A., Striccoli M.
Chemistry - A European Journal , 2020
31.
rcr_90_10_1213_bib31
Dos Santos
Trac. Trends Anal. Chem. , 2020
32.
Plasmon‐Enhanced Fluorescence Resonance Energy Transfer
Zong H., Wang X., Mu X., Wang J., Sun M.
Chemical Record , 2019
34.
Monitoring membrane viscosity in differentiating stem cells using BODIPY-based molecular rotors and FLIM
Kashirina A.S., López-Duarte I., Kubánková M., Gulin A.A., Dudenkova V.V., Rodimova S.A., Torgomyan H.G., Zagaynova E.V., Meleshina A.V., Kuimova M.K.
Scientific Reports , 2020
35.
Brodwolf R., Volz-Rakebrand P., Stellmacher J., Wolff C., Unbehauen M., Haag R., Schäfer-Korting M., Zoschke C., Alexiev U.
Theranostics , 2020
36.
Live Cell Imaging of Viscosity in 3D Tumour Cell Models
Shirmanova M.V., Shimolina L.E., Lukina M.M., Zagaynova E.V., Kuimova M.K.
Advances in Experimental Medicine and Biology , 2017
38.
The Chemistry of Fluorescent Bodipy Dyes: Versatility Unsurpassed
Ulrich G., Ziessel R., Harriman A.
Angewandte Chemie - International Edition , 2008
40.
The smallest and one of the brightest. Efficient preparation and optical description of the parent borondipyrromethene system.
Arroyo I.J., Hu R., Merino G., Tang B.Z., Peña-Cabrera E.
Journal of Organic Chemistry , 2009
42.
rcr_90_10_1213_bib42
Wei
Chem. – Eur. J. , 2018
43.
Genetically encoded fluorescent indicators for live cell pH imaging
Martynov V.I., Pakhomov A.A., Deyev I.E., Petrenko A.G.
Biochimica et Biophysica Acta - General Subjects , 2018
44.
rcr_90_10_1213_bib44
Bai
Chem. Commun. , 2019
45.
A Straightforward Substitution Strategy to Tune BODIPY Dyes Spanning the Near-Infrared Region via Suzuki–Miyaura Cross-Coupling
Li G., Otsuka Y., Matsumiya T., Suzuki T., Li J., Takahashi M., Yamada K.
Materials , 2018
46.
Pyrromethene-BF2 complexes (4,4′-difluoro-4-bora-3a,4a-diaza-s-indacenes). Synthesis and luminescence properties
de Wael E.V., Pardoen J.A., van Koeveringe J.A., Lugtenburg J.
Recueil des Travaux Chimiques des Pays-Bas , 1977
47.
Meso-substituted-BODIPY based fluorescent biomarker: Spectral characteristics, photostability and possibilities for practical application
Guseva G.B., Antina E.V., Berezin M.B., Pavelyev R.S., Kayumov A.R., Sharafutdinov I.S., Lisovskaya S.А., Lodochnikova O.A., Islamov D.R., Usachev K.S., Boichuk S.V., Nikitina L.E.
Journal of Photochemistry and Photobiology A: Chemistry , 2020
48.
When Push Comes to Shove: Unravelling the Mechanism and Scope of Nonemissive meso-Unsaturated BODIPY Dyes
Lincoln R., Greene L.E., Bain C., Flores-Rizo J.O., Bohle D.S., Cosa G.
Journal of Physical Chemistry B , 2015
49.
Pakhomov Alexey Alexandrovich, Kononevich Yuriy Nikolaevich, Korlyukov Alexander Aleksandrovich, Martynov Vladimir Ivanovich, Muzafarov Aziz Mansurovich
Mendeleev Communications , 2016
50.
New 8-amino-BODIPY derivatives: surpassing laser dyes at blue-edge wavelengths.
Bañuelos J., Martín V., Gómez‐Durán C.F., Córdoba I.J., Peña‐Cabrera E., García‐Moreno I., Costela Á., Pérez‐Ojeda M.E., Arbeloa T., Arbeloa Í.L.
Chemistry - A European Journal , 2011
51.
Highly efficient and photostable photosensitizer based on BODIPY chromophore.
Yogo T., Urano Y., Ishitsuka Y., Maniwa F., Nagano T.
Journal of the American Chemical Society , 2005
52.
A versatile fluorescent molecular probe endowed with singlet oxygen generation under white-light photosensitization
Durán-Sampedro G., Epelde-Elezcano N., Martínez-Martínez V., Esnal I., Bañuelos J., García-Moreno I., Agarrabeitia A.R., de la Moya S., Tabero A., Lazaro-Carrillo A., Villanueva A., Ortiz M.J., López-Arbeloa I.
Dyes and Pigments , 2017
53.
BODIPY dyes in photodynamic therapy
Kamkaew A., Lim S.H., Lee H.B., Kiew L.V., Chung L.Y., Burgess K.
Chemical Society Reviews , 2013
54.
Recent strategies to improve boron dipyrromethene (BODIPY) for photodynamic cancer therapy: an updated review
Kue C.S., Ng S.Y., Voon S.H., Kamkaew A., Chung L.Y., Kiew L.V., Lee H.B.
Photochemical and Photobiological Sciences , 2018
55.
BODIPYs in antitumoral and antimicrobial photodynamic therapy: An integrating review
Agazzi M.L., Ballatore M.B., Durantini A.M., Durantini E.N., Tomé A.C.
Journal of Photochemistry and Photobiology C: Photochemistry Reviews , 2019
56.
Bidirectional Switching of Near IR Emitting Boradiazaindacene Fluorophores
Deniz E., Isbasar G.C., Bozdemir Ö.A., Yildirim L.T., Siemiarczuk A., Akkaya E.U.
Organic Letters , 2008
58.
Effect of the substitution position (2, 3 or 8) on the spectroscopic and photophysical properties of BODIPY dyes with a phenyl, styryl or phenylethynyl group
Orte A., Debroye E., Ruedas-Rama M.J., Garcia-Fernandez E., Robinson D., Crovetto L., Talavera E.M., Alvarez-Pez J.M., Leen V., Verbelen B., Cunha Dias de Rezende L., Dehaen W., Hofkens J., Van der Auweraer M., Boens N., et. al.
RSC Advances , 2016
59.
Tuning the photo-physical properties of BODIPY dyes: Effects of 1, 3, 5, 7- substitution on their optical and electrochemical behaviours
Tao J., Sun D., Sun L., Li Z., Fu B., Liu J., Zhang L., Wang S., Fang Y., Xu H.
Dyes and Pigments , 2019
60.
BOIMPYs: Rapid Access to a Family of Red-Emissive Fluorophores and NIR Dyes
Patalag L.J., Jones P.G., Werz D.B.
Angewandte Chemie - International Edition , 2016
61.
π-Fused bis-BODIPY as a candidate for NIR dyes
Nakamura M., Tahara H., Takahashi K., Nagata T., Uoyama H., Kuzuhara D., Mori S., Okujima T., Yamada H., Uno H.
Organic and Biomolecular Chemistry , 2012
62.
Fluorescent Properties of 8-Substituted BODIPY Dyes: Influence of Solvent Effects
Marfin Y.S., Merkushev D.A., Usoltsev S.D., Shipalova M.V., Rumyantsev E.V.
Journal of Fluorescence , 2015
63.
Phenanthrene-fused boron-dipyrromethenes as bright long-wavelength fluorophores.
Descalzo A.B., Xu H., Xue Z., Hoffmann K., Shen Z., Weller M.G., You X., Rurack K.
Organic Letters , 2008
64.
Yellow NIR dye: π-fused bisbenzoBODIPYs with electron-withdrawing groups
Nakamura M., Kitatsuka M., Takahashi K., Nagata T., Mori S., Kuzuhara D., Okujima T., Yamada H., Nakae T., Uno H.
Organic and Biomolecular Chemistry , 2014
65.
rcr_90_10_1213_bib65
Wang
J. Org. Chem. , 2016
66.
Synthesis and Spectroscopic and Cellular Properties of Near-IR [a]Phenanthrene-Fused 4,4-Difluoro-4-bora-3a,4a-diaza-s-indacenes
Zhao N., Xuan S., Zhou Z., Fronczek F.R., Smith K.M., Vicente M.G.
Journal of Organic Chemistry , 2017
67.
B,O-Chelated Azadipyrromethenes as Near-IR Probes
Loudet A., Bandichhor R., Burgess K., Palma A., McDonnell S.O., Hall M.J., O’Shea D.F.
Organic Letters , 2008
68.
Conformationally restricted aza-dipyrromethene boron difluorides (aza-BODIPYs) with high fluorescent quantum yields.
Jiao L., Wu Y., Ding Y., Wang S., Zhang P., Yu C., Wei Y., Mu X., Hao E.
Chemistry - An Asian Journal , 2014
69.
Exploring the Relationship between BODIPY Structure and Spectroscopic Properties to Design Fluorophores for Bioimaging
Donnelly J.L., Offenbartl‐Stiegert D., Marín‐Beloqui J.M., Rizzello L., Battaglia G., Clarke T.M., Howorka S., Wilden J.D.
Chemistry - A European Journal , 2019
70.
General route to symmetric and asymmetric meso-CF3-3(5)-aryl(hetaryl)- and 3,5-diaryl(dihetaryl)-BODIPY dyes.
Sobenina L.N., Vasil’tsov A.M., Petrova O.V., Petrushenko K.B., Ushakov I.A., Clavier G., Meallet-Renault R., Mikhaleva A.I., Trofimov B.A.
Organic Letters , 2011
71.
Environment-Responsive 8-CF3-BODIPY Dyes with Aniline Groups at the 3 Position: Synthesis, Optical Properties and RI-CC2 Calculations
Petrushenko K.B., Petrushenko I.K., Petrova O.V., Sobenina L.N., Ushakov I.A., Trofimov B.A.
Asian Journal of Organic Chemistry , 2017
72.
Novel environment-sensitive 8-CF 3 -BODIPY dye with 4-(dimethylamino)phenyl group at the 3-position: Synthesis and optical properties
Petrushenko K.B., Petrushenko I.K., Petrova O.V., Sobenina L.N., Trofimov B.A.
Dyes and Pigments , 2017
73.
Effect of meso-substituents on the electronic transitions of BODIPY dyes: DFT and RI-CC2 study
Petrushenko I.K., Petrushenko K.B.
Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy , 2015
78.
rcr_90_10_1213_bib78
Yang
Proc. Natl. Acad. Sci. USA , 2006
79.
Carborane-Bodipy scaffolds for through space energy transfer
Ziessel R., Ulrich G., Olivier J.H., Bura T., Sutter A.
Chemical Communications , 2010
80.
rcr_90_10_1213_bib80
Zhao
J. Mater. Chem. , 2011
81.
Near-infrared fluorescent probes with BODIPY donors and rhodamine and merocyanine acceptors for ratiometric determination of lysosomal pH variance
Xia S., Fang M., Wang J., Bi J., Mazi W., Zhang Y., Luck R.L., Liu H.
Sensors and Actuators, B: Chemical , 2019
82.
Synthesis of directly connected BODIPY oligomers through Suzuki-Miyaura coupling.
Hayashi Y., Yamaguchi S., Cha W.Y., Kim D., Shinokubo H.
Organic Letters , 2011
86.
Synthesis, computational modeling, and properties of benzo-appended BODIPYs.
Uppal T., Hu X., Fronczek F.R., Maschek S., Bobadova-Parvanova P., Vicente M.G.
Chemistry - A European Journal , 2012
87.
BODIPY-based dye for no-wash live-cell staining and imaging
Pakhomov A.A., Deyev I.E., Ratnikova N.M., Chumakov S.P., Mironiuk V.B., Kononevich Y.N., Muzafarov A.M., Martynov V.I.
BioTechniques , 2017
88.
BODIPY with Tuned Amphiphilicity as a Fluorogenic Plasma Membrane Probe
Collot M., Boutant E., Lehmann M., Klymchenko A.S.
Bioconjugate Chemistry , 2018
90.
Water-soluble BODIPY and aza-BODIPY dyes: synthetic progress and applications
Fan G., Yang L., Chen Z.
Frontiers of Chemical Science and Engineering , 2014
92.
Syntheses and Spectral Properties of Functionalized, Water-Soluble BODIPY Derivatives
Li L., Han J., Nguyen B., Burgess K.
Journal of Organic Chemistry , 2008
94.
Synthesis of Water-Soluble Far-Red-Emitting Amphiphilic BODIPY Dyes
Bardon K.M., Selfridge S., Adams D.S., Minns R.A., Pawle R., Adams T.C., Takiff L.
ACS Omega , 2018
96.
New insights into the solubilization of Bodipy dyes
Niu S., Ulrich G., Retailleau P., Harrowfield J., Ziessel R.
Tetrahedron Letters , 2009
97.
Water-Soluble BODIPY Derivatives
Niu S.L., Ulrich G., Ziessel R., Kiss A., Renard P., Romieu A.
Organic Letters , 2009
98.
SYNTHESIS AND STUDY OF SPECTRAL PROPERTIES OF AMINO ACIDS – BODIPY CONJUGATES
Rumyantsev E.V., Khodov I.A., Ksenofontov A.A., Ksenofontova K.V.
ChemChemTech , 2020
99.
Highly Water-Soluble Neutral BODIPY Dyes with Controllable Fluorescence Quantum Yields
Zhu S., Zhang J., Vegesna G., Luo F., Green S.A., Liu H.
Organic Letters , 2010
100.
Synthesis and photophysical characterization of highly water-soluble PEGylated BODIPY derivatives for cellular imaging
Badon I.W., Lee J., Pegarro Vales T., Cho B.K., Kim H.
Journal of Photochemistry and Photobiology A: Chemistry , 2019
101.
Syntheses of 1,2,3-triazole-BODIPYs bearing up to three carbohydrate units
Nguyen A.L., Griffin K.E., Zhou Z., Fronczek F.R., Smith K.M., Vicente M.G.
New Journal of Chemistry , 2018
102.
Monoalkoxy BODIPYs—A Fluorophore Class for Bioimaging
Courtis A.M., Santos S.A., Guan Y., Hendricks J.A., Ghosh B., Szantai-Kis D.M., Reis S.A., Shah J.V., Mazitschek R.
Bioconjugate Chemistry , 2014
103.
A general modular approach for the solubility tagging of BODIPY dyes
Blázquez-Moraleja A., Álvarez-Fernández D., Prieto Montero R., García-Moreno I., Martínez-Martínez V., Bañuelos J., Sáenz-de-Santa-María I., Chiara M.D., Chiara J.L.
Dyes and Pigments , 2019
104.
Cell internalization of BODIPY-based fluorescent dyes bearing carbohydrate residues
Papalia T., Siracusano G., Colao I., Barattucci A., Aversa M.C., Serroni S., Zappalà G., Campagna S., Sciortino M.T., Puntoriero F., Bonaccorsi P.
Dyes and Pigments , 2014
105.
Synthesis and Photophysical Properties of Tumor-Targeted Water-Soluble BODIPY Photosensitizers for Photodynamic Therapy
Khuong Mai D., Kang B., Pegarro Vales T., Badon I.W., Cho S., Lee J., Kim E., Kim H.
Molecules , 2020
107.
Zwitterionic BODIPYs with large stokes shift: small molecular biomarkers for live cells
Sekhar A.R., Sariki S.K., Reddy R.V., Bisai A., Sahu P.K., Tomar R.S., Sankar J.
Chemical Communications , 2017
108.
Unadulterated BODIPY nanoparticles for biomedical applications
Zhang T., Ma C., Sun T., Xie Z.
Coordination Chemistry Reviews , 2019
109.
Core–shell polymeric nanoparticles comprising BODIPY and fluorescein as ultra-bright ratiometric fluorescent pH sensors
Grazon C., Si Y., Placial J., Rieger J., Méallet-Renault R., Clavier G.
Photochemical and Photobiological Sciences , 2019
110.
Rational design of BODIPY organic nanoparticles for enhanced photodynamic/photothermal therapy
Song N., Fu L., Liu Y., Li Y., Chen L., Wang X., Liu S., Xie Z.
Dyes and Pigments , 2019
112.
Rapid assay processing by integration of dual-color fluorescence cross-correlation spectroscopy: High throughput screening for enzyme activity
Koltermann A., Kettling U., Bieschke J., Winkler T., Eigen M.
Proceedings of the National Academy of Sciences of the United States of America , 1998
115.
Synthesis, Photophysical Properties and Solvatochromism of Meso-Substituted Tetramethyl BODIPY Dyes
Cunha Dias de Rezende L., Menezes Vaidergorn M., Biazzotto Moraes J.C., da Silva Emery F.
Journal of Fluorescence , 2013
116.
Synthesis and photophysical properties of a new BODIPY-based siloxane dye
Pakhomov A.A., Kononevich Y.N., Stukalova M.V., Svidchenko E.A., Surin N.M., Cherkaev G.V., Shchegolikhina O.I., Martynov V.I., Muzafarov A.M.
Tetrahedron Letters , 2016
117.
Spectral-kinetic properties and efficiency of singlet oxygen generation by some dipyrromethenes
Aksenova I.V., Kuznetsova R.T., Pozdnyakov I.P., Plyusnin V.F., Berezin M.B., Bumagina N.A., Jarnikova E.S., Parkhats M.V., Dzhagarov B.M.
Journal of Photochemistry and Photobiology A: Chemistry , 2017
119.
π-Extended BODIPY Analogues: Synthesis, Electronic Structure, Potential Utility for in vivo Imaging Applications and Cytotoxicity
Liang X., Luo H., Lan Y., Zhu W., Mack J., Hlatshwayo Z., Nyokong T., Chen Q.
Macroheterocycles , 2018
120.
A BODIPY-derived fluorescent probe for cellular pH measurements
Han F., Xu Y., Jiang D., Qin Y., Chen H.
Analytical Biochemistry , 2013
121.
Star‐Shaped Phenylene BODIPY: Synthesis, Properties and Biocompatibility Assessment Using Zebrafish
Mahanta C.S., Aparna S., Das S.K., Jena B.B., Swain B.R., Patri M., Dash B.P., Satapathy R.
ChemistrySelect , 2020
122.
rcr_90_10_1213_bib122
123.
Organelle‐Targeted BODIPY Photocages: Visible‐Light‐Mediated Subcellular Photorelease
Kand D., Pizarro L., Angel I., Avni A., Friedmann‐Morvinski D., Weinstain R.
Angewandte Chemie - International Edition , 2019
124.
Morphological criteria to distinguish cell death induced by apoptotic and necrotic treatments
Rello S., Stockert J.C., Moreno V., G�mez A., Pacheco M., Juarranz A., Ca�ete M., Villanueva A.
Apoptosis : an international journal on programmed cell death , 2005
125.
Molecular Rotor Measures Viscosity of Live Cells via Fluorescence Lifetime Imaging
Kuimova M.K., Yahioglu G., Levitt J.A., Suhling K.
Journal of the American Chemical Society , 2008
126.
A molecular rotor for measuring viscosity in plasma membranes of live cells
López-Duarte I., Vu T.T., Izquierdo M.A., Bull J.A., Kuimova M.K.
Chemical Communications , 2014
127.
Transport into and out of the Nucleus
Macara I.G.
Microbiology and Molecular Biology Reviews , 2001
128.
Endoplasmic Reticulum (ER)-Targeted, Galectin-Mediated Retrograde Transport by Using a HaloTag Carrier Protein
Son S., Seko A., Daikoku S., Fujikawa K., Suzuki K., Ito Y., Kanie O.
ChemBioChem , 2016
130.
Tracking HOCl concentrations across cellular organelles in real time using a super resolution microscopy probe
Ali F., Aute S., Sreedharan S., Anila H.A., Saeed H.K., Smythe C.G., Thomas J.A., Das A.
Chemical Communications , 2018
131.
BODIPY–Coumarin Conjugate as an Endoplasmic Reticulum Membrane Fluidity Sensor and Its Application to ER Stress Models
Lee H., Yang Z., Wi Y., Kim T.W., Verwilst P., Lee Y.H., Han G., Kang C., Kim J.S.
Bioconjugate Chemistry , 2015
132.
Induction of Drug Metabolism: The Role of Nuclear Receptors
Handschin C., Meyer U.A.
Pharmacological Reviews , 2003
134.
Visualization of Endoplasmic Reticulum Aminopeptidase 1 under Different Redox Conditions with a Two-Photon Fluorescent Probe
Xu S., Liu H., Hu X., Huan S., Zhang J., Liu Y., Yuan L., Qu F., Zhang X., Tan W.
Analytical Chemistry , 2017
137.
In Search of the Perfect Photocage: Structure-Reactivity Relationships in meso-Methyl BODIPY Photoremovable Protecting Groups.
Slanina T., Shrestha P., Palao E., Kand D., Peterson J.A., Dutton A.S., Rubinstein N., Weinstain R., Winter A.H., Klán P.
Journal of the American Chemical Society , 2017
138.
BODIPY-Derived Photoremovable Protecting Groups Unmasked with Green Light
Goswami P.P., Syed A., Beck C.L., Albright T.R., Mahoney K.M., Unash R., Smith E.A., Winter A.H.
Journal of the American Chemical Society , 2015
139.
meso-Methylhydroxy BODIPY: a scaffold for photo-labile protecting groups
Rubinstein N., Liu P., Miller E.W., Weinstain R.
Chemical Communications , 2015
140.
Targeting Mitochondria
Hoye A.T., Davoren J.E., Wipf P., Fink M.P., Kagan V.E.
Accounts of Chemical Research , 2008
141.
Localization of mitochondria in living cells with rhodamine 123.
Johnson L.V., Walsh M.L., Chen L.B.
Proceedings of the National Academy of Sciences of the United States of America , 1980
142.
rcr_90_10_1213_bib142
Sui
2016
144.
Correlation of the Base Strengths of Amines1
Hall H.K.
Journal of the American Chemical Society , 1957
146.
rcr_90_10_1213_bib146
Kong
Chem. Commun. , 2019
147.
The Demonstration of Pneumococcal Antigen in Tissues by the Use of Fluorescent Antibody
Coons A.H., Creech H.J., Jones R.N., Berliner E.
Journal of Immunology , 1942
148.
Activity of the multidrug transporter results in alkalinization of the cytosol: measurement of cytosolic pH by microinjection of a pH-sensitive dye.
Thiebaut F., Currier S.J., Whitaker J., Haugland R.P., Gottesman M.M., Pastan I., Willingham M.C.
Journal of Histochemistry and Cytochemistry , 1990
150.
Site-selective protein-modification chemistry for basic biology and drug development
Krall N., da Cruz F.P., Boutureira O., Bernardes G.J.
Nature Chemistry , 2015
151.
Bioorthogonal chemistry: recent progress and future directions
Lim R.K., Lin Q.
Chemical Communications , 2010
152.
Chemistry in living systems
Prescher J.A., Bertozzi C.R.
Nature Chemical Biology , 2005
154.
A tagging-via-substrate technology for detection and proteomics of farnesylated proteins
Kho Y., Kim S.C., Jiang C., Barma D., Kwon S.W., Cheng J., Jaunbergs J., Weinbaum C., Tamanoi F., Falck J., Zhao Y.
Proceedings of the National Academy of Sciences of the United States of America , 2004
155.
Incorporation of azides into recombinant proteins for chemoselective modification by the Staudinger ligation
Kiick K.L., Saxon E., Tirrell D.A., Bertozzi C.R.
Proceedings of the National Academy of Sciences of the United States of America , 2001
157.
Activity-Based Protein Profiling in Vivo Using a Copper(I)-Catalyzed Azide-Alkyne [3 + 2] Cycloaddition
Speers A.E., Adam G.C., Cravatt B.F.
Journal of the American Chemical Society , 2003
160.
Mapping of voltage sensor positions in resting and inactivated mammalian sodium channels by LRET
Kubota T., Durek T., Dang B., Finol-Urdaneta R.K., Craik D.J., Kent S.B., French R.J., Bezanilla F., Correa A.M.
Proceedings of the National Academy of Sciences of the United States of America , 2017
161.
Chemical tags: Applications in live cell fluorescence imaging
Wombacher R., Cornish V.W.
Journal of Biophotonics , 2011
162.
A general method for the covalent labeling of fusion proteins with small molecules in vivo
Keppler A., Gendreizig S., Gronemeyer T., Pick H., Vogel H., Johnsson K.
Nature Biotechnology , 2002
163.
Labeling of fusion proteins with synthetic fluorophores in live cells
Keppler A., Pick H., Arrivoli C., Vogel H., Johnsson K.
Proceedings of the National Academy of Sciences of the United States of America , 2004
164.
Site‐Specific Protein Labeling with SNAP‐Tags
Cole N.B.
Current Protocols in Protein Science , 2013
165.
An Engineered Protein Tag for Multiprotein Labeling in Living Cells
Gautier A., Juillerat A., Heinis C., Corrêa I.R., Kindermann M., Beaufils F., Johnsson K.
Chemistry & Biology , 2008
166.
HaloTag: A Novel Protein Labeling Technology for Cell Imaging and Protein Analysis
Los G.V., Encell L.P., McDougall M.G., Hartzell D.D., Karassina N., Zimprich C., Wood M.G., Learish R., Ohana R.F., Urh M., Simpson D., Mendez J., Zimmerman K., Otto P., Vidugiris G., et. al.
ACS Chemical Biology , 2008
168.
HaloTag Technology: A Versatile Platform for Biomedical Applications
England C.G., Luo H., Cai W.
Bioconjugate Chemistry , 2015
169.
In vivo protein labeling with trimethoprim conjugates: a flexible chemical tag
Miller L.W., Cai Y., Sheetz M.P., Cornish V.W.
Nature Methods , 2005
170.
An In Vivo Covalent TMP-Tag Based on Proximity-Induced Reactivity
Gallagher S.S., Sable J.E., Sheetz M.P., Cornish V.W.
ACS Chemical Biology , 2009
171.
The Covalent Trimethoprim Chemical Tag Facilitates Single Molecule Imaging with Organic Fluorophores
Wang T., Friedman L., Gelles J., Min W., Hoskins A., Cornish V.
Biophysical Journal , 2014
172.
rcr_90_10_1213_bib172
Kobayashi
J. Am. Chem. Soc. , 2012
173.
New Biarsenical Ligands and Tetracysteine Motifs for Protein Labeling in Vitro and in Vivo:  Synthesis and Biological Applications
Adams S.R., Campbell R.E., Gross L.A., Martin B.R., Walkup G.K., Yao Y., Llopis J., Tsien R.Y.
Journal of the American Chemical Society , 2002
174.
Bodipy-diacrylate imaging probes for targeted proteins inside live cells
Lee J., Lee S., Zhai D., Ahn Y., Yeo H.Y., Tan Y.L., Chang Y.
Chemical Communications , 2011
175.
rcr_90_10_1213_bib175
Chen
Angew. Chem., Int. Ed. , 2018
176.
Minimal Tags for Rapid Dual-Color Live-Cell Labeling and Super-Resolution Microscopy
Nikić I., Plass T., Schraidt O., Szymański J., Briggs J.A., Schultz C., Lemke E.A.
Angewandte Chemie - International Edition , 2014
178.
Fluorescent Properties of BODIPY Sensors Based on Photoinduced Electron Transfer
Marfin Y.S., Shipalova M.V., Kurzin V.O., Ksenofontova K.V., Solomonov A.V., Rumyantsev E.V.
Journal of Fluorescence , 2016
180.
Review on Recent Advances in Metal Ions Sensing Using Different Fluorescent Probes
Chowdhury S., Rooj B., Dutta A., Mandal U.
Journal of Fluorescence , 2018
181.
A ratiometric, fluorescent BODIPY-based probe for transition and heavy metal ions
Qin W., Dou W., Leen V., Dehaen W., Van der Auweraer M., Boens N.
RSC Advances , 2016
182.
Detection of Hg 2+ by a FRET ratiometric fluorescent probe based on a novel BODIPY-RhB system
Cheng D., Zhao W., Yang H., Huang Z., Liu X., Han A.
Tetrahedron Letters , 2016
183.
rcr_90_10_1213_bib183
Zhang
Spectrochim. Acta, Part A , 2019
184.
Cyclometalated iridium–BODIPY ratiometric O2 sensors
Choung K.S., Marroquin K., Teets T.S.
Chemical Science , 2019
185.
Development of ratiometric carbohydrate sensor based on boron dipyrromethene (BODIPY) scaffold.
Cheruthu N.M., Komatsu T., Ueno T., Hanaoka K., Urano Y.
Bioorganic and Medicinal Chemistry Letters , 2019
186.
A novel ratiometric fluorescent probe based on a BODIPY derivative for Cu2+ detection in aqueous solution
Shu T., Yang Z., Cen Z., Deng X., Deng Y., Dong C., Yu Y.
Analytical Methods , 2018
187.
Modulation of optical properties of BODIPY fluorophore via intramolecular charge transfer
Thakare S.S., Chakraborty G., More A.B., Chattopadhyay S., Mula S., Ray A.K., Sekar N.
Journal of Luminescence , 2018
188.
Red fluorescent pyrazoline-BODIPY nanoparticles for ultrafast and long-term bioimaging
Zhang Y., Zheng X., Zhang L., Yang Z., Chen L., Wang L., Liu S., Xie Z.
Organic and Biomolecular Chemistry , 2020
189.
rcr_90_10_1213_bib189
Luo
2001
190.
rcr_90_10_1213_bib190
Hu
Chem. Commun. , 2012
191.
Design of Novel Pyrene-Bodipy Dyads: Synthesis, Characterization, Optical Properties, and FRET Studies
Porcu P., Vonlanthen M., González-Méndez I., Ruiu A., Rivera E.
Molecules , 2018
193.
BODIPY/Nile-Red-Based Efficient FRET Pair: Selective Assay of Endoplasmic Reticulum Membrane Fluidity
Yang Z., Wi Y., Yoon Y., Verwilst P., Jang J.H., Kim T.W., Kang C., Kim J.S.
Chemistry - An Asian Journal , 2015
194.
An FITC-BODIPY FRET Couple: Application to Selective, Ratiometric Detection and Bioimaging of Cysteine
Ma D.H., Kim D., Akisawa T., Lee K., Kim K., Ahn K.H.
Chemistry - An Asian Journal , 2014
195.
Live cells imaging using a turn-on FRET-based BODIPY probe for biothiols
Su D., Teoh C.L., Sahu S., Das R.K., Chang Y.
Biomaterials , 2014
197.
Development of pH-Responsive BODIPY Probes for Staining Late Endosome in Live Cells
Miao F., Uchinomiya S., Ni Y., Chang Y., Wu J.
ChemPlusChem , 2016
198.
Lysosome-targeting ratiometric fluorescent pH probes based on long-wavelength BODIPY
Zhu M., Xing P., Zhou Y., Gong L., Zhang J., Qi D., Bian Y., Du H., Jiang J.
Journal of Materials Chemistry B , 2018
199.
Lysosome triggered near-infrared fluorescence imaging of cellular trafficking processes in real time
Grossi M., Morgunova M., Cheung S., Scholz D., Conroy E., Terrile M., Panarella A., Simpson J.C., Gallagher W.M., O’Shea D.F.
Nature Communications , 2016
200.
Sensors and regulators of intracellular pH
Casey J.R., Grinstein S., Orlowski J.
Nature Reviews Molecular Cell Biology , 2009
201.
Calcium Signaling
Clapham D.E.
Cell , 2007
202.
Fluorescent indicators for Ca2+based on green fluorescent proteins and calmodulin
Miyawaki A., Llopis J., Heim R., McCaffery J.M., Adams J.A., Ikura M., Tsien R.Y.
Nature , 1997
203.
Imaging cellular signals in the heart in vivo: Cardiac expression of the high-signal Ca2+ indicator GCaMP2.
Tallini Y.N., Ohkura M., Choi B., Ji G., Imoto K., Doran R., Lee J., Plan P., Wilson J., Xin H., Sanbe A., Gulick J., Mathai J., Robbins J., Salama G., et. al.
Proceedings of the National Academy of Sciences of the United States of America , 2006
205.
A membrane permeable fluorescent Ca2+probe based on bis-BODIPY with branched PEG
Duan W., Wei H., Cui T., Gao B.
Journal of Materials Chemistry B , 2015
206.
Photophysics of the fluorescent K+ indicator PBFI.
Meuwis K., Boens N., De Schryver F.C., Gallay J., Vincent M.
Biophysical Journal , 1995
207.
rcr_90_10_1213_bib207
Sui
2015
208.
Red- to NIR-Emitting, BODIPY-Based, K+-Selective Fluoroionophores and Sensing Materials
Müller B.J., Borisov S.M., Klimant I.
Advanced Functional Materials , 2016
210.
Mg 2+ Regulates Cytotoxic Functions of NK and CD8 T Cells in Chronic EBV Infection Through NKG2D
Chaigne-Delalande B., Li F., O’Connor G.M., Lukacs M.J., Jiang P., Zheng L., Shatzer A., Biancalana M., Pittaluga S., Matthews H.F., Jancel T.J., Bleesing J.J., Marsh R.A., Kuijpers T.W., Nichols K.E., et. al.
Science , 2013
211.
rcr_90_10_1213_bib211
Lin
Org. Biomol. Chem. , 2016
212.
A fluorescent activatable probe for imaging intracellular Mg2+
Treadwell R., de Moliner F., Subiros-Funosas R., Hurd T., Knox K., Vendrell M.
Organic and Biomolecular Chemistry , 2018
214.
4-Oxo-4H-quinolizine-3-carboxylic Acids as Mg2+ Selective, Fluorescent Indicators
Otten P.A., London R.E., Levy L.A.
Bioconjugate Chemistry , 2001
216.
ZINC AND BRAIN INJURY
Choi D.W., Koh J.Y.
Annual Review of Neuroscience , 1998
217.
Zn2+: a novel ionic mediator of neural injury in brain disease
Weiss J.H., Sensi S.L., Koh J.Y.
Trends in Pharmacological Sciences , 2000
218.
rcr_90_10_1213_bib218
Harriman
2007
220.
rcr_90_10_1213_bib220
Jiang
2002
222.
Development of a Ratiometric Fluorescent Zinc Ion Probe in Near-Infrared Region, Based on Tricarbocyanine Chromophore
Kiyose K., Kojima H., Urano Y., Nagano T.
Journal of the American Chemical Society , 2006
223.
Highly water-soluble BODIPY-based fluorescent probes for sensitive fluorescent sensing of zinc(ii).
Zhu S., Zhang J., Janjanam J., Vegesna G., Luo F., Tiwari A., Liu H.
Journal of Materials Chemistry B , 2013
225.
Gorbatov Sergey Aleksandrovich, Kozlov Mikhail Aleksandrovich, Zlobin Ilya Evgen'evich, Kartashov Alexander Valer'evich, Zavarzin Igor Viktorovich, Volkova Yulia Alekseevna
Mendeleev Communications , 2018
226.
Ratiometric fluorescent and colorimetric BODIPY-based sensor for zinc ions in solution and living cells
Xia S., Shen J., Wang J., Wang H., Fang M., Zhou H., Tanasova M.
Sensors and Actuators, B: Chemical , 2018
227.
Molecular structure and physiological function of chloride channels.
Jentsch T.J., Stein V., Weinreich F., Zdebik A.A.
Physiological Reviews , 2002
228.
Chromogenic and fluorogenic chemosensors and reagents for anions. A comprehensive review of the year 2009
Moragues M.E., Martínez-Máñez R., Sancenón F.
Chemical Society Reviews , 2011
230.
A boron-dipyrrin–mercury(II) complex as a fluorescence turn-on sensor for chloride and applications towards logic gates
Madhu S., Kalaiyarasi R., Basu S.K., Jadhav S., Ravikanth M.
Journal of Materials Chemistry C , 2014
231.
rcr_90_10_1213_bib231
Liu
Microchem. J. , 2020
232.
rcr_90_10_1213_bib232
Singh
ChemistrySelect , 2019
233.
rcr_90_10_1213_bib233
Zhan
Dalton Trans. , 2019
235.
Sensors for the optical detection ofcyanide ion
Xu Z., Chen X., Kim H.N., Yoon J.
Chemical Society Reviews , 2010
238.
Rynkowski J., Michalska M., Żurawicz E., Kałużna-Czaplińska J.
Acta Biochimica Polonica , 2013
239.
The importance of glutathione in human disease
Townsend D.M., Tew K.D., Tapiero H.
Biomedicine and Pharmacotherapy , 2003
240.
Glutathione deficiency and human immunodeficiency virus infection
Staal F.J., Ela S.W., Roederer M., Anderson M.T., Herzenberg L.A., Herzenberg L.A.
The Lancet , 1992
243.
Design strategies of fluorescent probes for selective detection among biothiols
Niu L., Chen Y., Zheng H., Wu L., Tung C., Yang Q.
Chemical Society Reviews , 2015
244.
Nitroolefin-based BODIPY as a novel water-soluble ratiometric fluorescent probe for detection of endogenous thiols
Kang J., Huo F., Chao J., Yin C.
Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy , 2018
247.
rcr_90_10_1213_bib247
Gao
Chem. – Eur. J. , 2019
248.
Reactive oxygen species, antioxidants, and the mammalian thioredoxin system.
Nordberg J., Arnér E.S.
Free Radical Biology and Medicine , 2001
249.
ROS as signalling molecules: mechanisms that generate specificity in ROS homeostasis
D'Autréaux B., Toledano M.B.
Nature Reviews Molecular Cell Biology , 2007
251.
Nitrosation and oxidation in the regulation of gene expression
Marshall H.E., Merchant K., Stamler J.S.
FASEB Journal , 2000
255.
The common biology of cancer and ageing
Finkel T., Serrano M., Blasco M.A.
Nature , 2007
257.
Biological hydrogen peroxide detection with aryl boronate and benzil BODIPY-based fluorescent probes
Purdey M.S., McLennan H.J., Sutton-McDowall M.L., Drumm D.W., Zhang X., Capon P.K., Heng S., Thompson J.G., Abell A.D.
Sensors and Actuators, B: Chemical , 2018
260.
rcr_90_10_1213_bib260
Ayala
2014
262.
Sensitive determination of endogenous hydroxyl radical in live cell by a BODIPY based fluorescent probe
Lei K., Sun M., Du L., Zhang X., Yu H., Wang S., Hayat T., Alsaedi A.
Talanta , 2017
264.
rcr_90_10_1213_bib264
Qu
RSC Adv. , 2020
266.
Glutathione Peroxidase-like Antioxidant Activity of Diaryl Diselenides:  A Mechanistic Study
Mugesh G., Panda A., Singh H.B., Punekar N.S., Butcher R.J.
Journal of the American Chemical Society , 2001
268.
Phenylselenyl containing turn-on dibodipy probe for selective detection of superoxide in mammalian breast cancer cell line
Deshmukh P.P., Navalkar A., Maji S.K., Manjare S.T.
Sensors and Actuators, B: Chemical , 2019
269.
Cyclic Organoselenide BODIPY-Based Probe: Targeting Superoxide in MCF-7 Cancer Cells
Madibone K.S., Deshmukh P.P., Navalkar A., Maji S.K., Badani P.M., Manjare S.T.
ACS Omega , 2020
270.
HO2•: The Forgotten Radical
de Grey A.D.
DNA and Cell Biology , 2002
271.
Lipid peroxidation in cell death.
Gaschler M.M., Stockwell B.R.
Biochemical and Biophysical Research Communications , 2017
272.
Design and Synthesis of a BODIPY-α-Tocopherol Adduct for Use as an Off/On Fluorescent Antioxidant Indicator
Oleynik P., Ishihara Y., Cosa G.
Journal of the American Chemical Society , 2007
273.
rcr_90_10_1213_bib273
Krumova
J. Am. Chem. Soc. , 2013
274.
rcr_90_10_1213_bib274
Greene
J. Am. Chem. Soc. , 2017
275.
Hydroxycinnamyl Derived BODIPY as a Lipophilic Fluorescence Probe for Peroxyl Radicals
Kusio J., Sitkowska K., Konopko A., Litwinienko G.
Antioxidants , 2020
276.
Neutrophils employ the myeloperoxidase system to generate antimicrobial brominating and chlorinating oxidants during sepsis
Gaut J.P., Yeh G.C., Tran H.D., Byun J., Henderson J.P., Richter G.M., Brennan M., Lusis A.J., Belaaouaj A., Hotchkiss R.S., Heinecke J.W.
Proceedings of the National Academy of Sciences of the United States of America , 2001
277.
Modeling the Reactions of Superoxide and Myeloperoxidase in the Neutrophil Phagosome
Winterbourn C.C., Hampton M.B., Livesey J.H., Kettle A.J.
Journal of Biological Chemistry , 2006
278.
Gupta R.K., Patel A.K., Shah N., Choudhary A.K., Jha U.K., Yadav U.C., Gupta P.K., Pakuwal U.
Asian Pacific Journal of Cancer Prevention , 2014
279.
Recent progress in the development of fluorescent, luminescent and colorimetric probes for detection of reactive oxygen and nitrogen species.
Chen X., Wang F., Hyun J.Y., Wei T., Qiang J., Ren X., Shin I., Yoon J.
Chemical Society Reviews , 2016
280.
A water-soluble BODIPY-based fluorescent probe for rapid and selective detection of hypochlorous acid in living cells
Jin Y., Lv M., Tao Y., Xu S., He J., Zhang J., Zhao W.
Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy , 2019
281.
rcr_90_10_1213_bib281
Shi
Dyes Pigm. , 2019
283.
Requirement for Transcription Factor IRF-1 in NO Synthase Induction in Macrophages
Kamijo R., Harada H., Matsuyama T., Bosland M., Gerecitano J., Shapiro D., Le J., Koh S.I., Kimura T., Green S.J., Mak T.W., Taniguchi T., Vilček J.
Science , 1994
284.
rcr_90_10_1213_bib284
Moncada
Pharmacol. Rev. , 1991
285.
Highly sensitive low-background fluorescent probes for imaging of nitric oxide in cells and tissues.
Zhang H., Chen J., Guo X., Wang H., Zhang H.
Analytical Chemistry , 2014
286.
rcr_90_10_1213_bib286
Juarez
Chem. – Eur. J. , 2015
287.
A BODIPY-based dual-responsive turn-on fluorescent probe for NO and nitrite
Zhang J., Pan F., Jin Y., Wang N., He J., Zhang W., Zhao W.
Dyes and Pigments , 2018
288.
Lysosomal disorders: From storage to cellular damage
Ballabio A., Gieselmann V.
Biochimica et Biophysica Acta - Molecular Cell Research , 2009
290.
Isoforms of nitric oxide synthase
Förstermann U., Gath I., Schwarz P., Closs E.I., Kleinert H.
Biochemical Pharmacology , 1995
292.
Discriminating formation of HNO from other reactive nitrogen oxide species
Donzelli S., Espey M.G., Thomas D.D., Mancardi D., Tocchetti C.G., Ridnour L.A., Paolocci N., King S.B., Miranda K.M., Lazzarino G., Fukuto J.M., Wink D.A.
Free Radical Biology and Medicine , 2006
293.
Reactions Catalyzed by Tetrahydrobiopterin-Free Nitric Oxide Synthase
Rusche K.M., Spiering M.M., Marletta M.A.
Biochemistry , 1998
295.
Role of nitroxyl (HNO) in cardiovascular system: From biochemistry to pharmacology
Sun H., Wu Z., Cao L., Zhu M., Nie X., Huang D., Sun M., Bian J.
Pharmacological Research , 2020
296.
A Fast and Selective Near-Infrared Fluorescent Sensor for Multicolor Imaging of Biological Nitroxyl (HNO)
Wrobel A.T., Johnstone T.C., Deliz Liang A., Lippard S.J., Rivera-Fuentes P.
Journal of the American Chemical Society , 2014
297.
Physical and structural properties of [Cu(BOT1)Cl]Cl, a fluorescent imaging probe for HNO
Royzen M., Wilson J.J., Lippard S.J.
Journal of Inorganic Biochemistry , 2013
299.
rcr_90_10_1213_bib299
Liu
Spectrochim Acta, Part A , 2020
301.
Peroxynitrite reactions and formation in mitochondria
Radi R., Cassina A., Hodara R., Quijano C., Castro L.
Free Radical Biology and Medicine , 2002
302.
Nitric Oxide and Peroxynitrite in Health and Disease
Pacher P., Beckman J.S., Liaudet L.
Physiological Reviews , 2007
303.
BODIPY-Based Fluorescent Probe for Peroxynitrite Detection and Imaging in Living Cells
Sun Z., Wang H., Liu F., Chen Y., Tam P.K., Yang D.
Organic Letters , 2009
306.
Optically monitoring voltage in neurons by photo-induced electron transfer through molecular wires
Miller E.W., Lin J.Y., Frady E.P., Steinbach P.A., Kristan W.B., Tsien R.Y.
Proceedings of the National Academy of Sciences of the United States of America , 2012
307.
BODIPY Fluorophores for Membrane Potential Imaging
Franke J.M., Raliski B.K., Boggess S.C., Natesan D.V., Koretsky E.T., Zhang P., Kulkarni R.U., Deal P.E., Miller E.W.
Journal of the American Chemical Society , 2019
309.
Structural control of the photodynamics of boron-dipyrrin complexes.
Kee H.L., Kirmaier C., Yu L., Thamyongkit P., Youngblood W.J., Calder M.E., Ramos L., Noll B.C., Bocian D.F., Scheidt W.R., Birge R.R., Lindsey J.S., Holten D.
Journal of Physical Chemistry B , 2005
310.
Molecular rotors--fluorescent biosensors for viscosity and flow.
Haidekker M.A., Theodorakis E.A.
Organic and Biomolecular Chemistry , 2007
311.
Imaging viscosity of intragranular mucin matrix in cystic fibrosis cells
Requena S., Ponomarchuk O., Castillo M., Rebik J., Brochiero E., Borejdo J., Gryczynski I., Dzyuba S.V., Gryczynski Z., Grygorczyk R., Fudala R.
Scientific Reports , 2017
312.
Functionalized BODIPYs as Fluorescent Molecular Rotors for Viscosity Detection
Miao W., Yu C., Hao E., Jiao L.
Frontiers in Chemistry , 2019
314.
A self-calibrating bipartite viscosity sensor for mitochondria.
Yang Z., He Y., Lee J., Park N., Suh M., Chae W., Cao J., Peng X., Jung H., Kang C., Kim J.S.
Journal of the American Chemical Society , 2013
315.
rcr_90_10_1213_bib315
Wu
Phys. Chem. Chem. Phys. , 2013
316.
Membrane-Bound Molecular Rotors Measure Viscosity in Live Cells via Fluorescence Lifetime Imaging
Levitt J.A., Kuimova M.K., Yahioglu G., Chung P., Suhling K., Phillips D.
Journal of Physical Chemistry C , 2009
318.
Linker length affects photostability of protein-targeted sensor of cellular microviscosity
Kubánková M., Chambers J.E., Huber R.G., Bond P.J., Marciniak S.J., Kuimova M.K.
Methods and Applications in Fluorescence , 2019
319.
Sensing Temperature in Vitro and in Cells Using a BODIPY Molecular Probe.
Ogle M.M., Smith McWilliams A.D., Ware M.J., Curley S.A., Corr S.J., Martí A.A.
Journal of Physical Chemistry B , 2019
321.
BODIPY-Based Two-Photon Fluorescent Probe for Real-Time Monitoring of Lysosomal Viscosity with Fluorescence Lifetime Imaging Microscopy.
Li L., Li K., Li M., Shi L., Liu Y., Zhang H., Pan S., Wang N., Zhou Q., Yu X.
Analytical Chemistry , 2018
322.
Dual-functional fluorescent molecular rotor for endoplasmic reticulum microviscosity imaging during reticulophagy
He Y., Shin J., Gong W., Das P., Qu J., Yang Z., Liu W., Kang C., Qu J., Kim J.S.
Chemical Communications , 2019
325.
Photoactivatable fluorescent proteins
Lukyanov K.A., Chudakov D.M., Lukyanov S., Verkhusha V.V.
Nature Reviews Molecular Cell Biology , 2005
326.
Structure and single crystal spectroscopy of Green Fluorescent Proteins
Bettati S., Pasqualetto E., Lolli G., Campanini B., Battistutta R.
Biochimica et Biophysica Acta - Proteins and Proteomics , 2011
327.
Fluorescent probes for super-resolution imaging in living cells
Fernández-Suárez M., Ting A.Y.
Nature Reviews Molecular Cell Biology , 2008
328.
Photoactivatable fluorescent proteins for diffraction-limited and super-resolution imaging
Lippincott-Schwartz J., Patterson G.H.
Trends in Cell Biology , 2009
329.
Small-Molecule Fluorescent Probes for Live-Cell Super-Resolution Microscopy
Wang L., Frei M.S., Salim A., Johnsson K.
Journal of the American Chemical Society , 2018
330.
Far-red photoactivatable BODIPYs for the super-resolution imaging of live cells
Zhang Y., Tang S., Ravelo L., Cusido J., Raymo F.M.
Methods in Enzymology , 2020
331.
Fluorescence Photoactivation by Ligand Exchange around the Boron Center of a BODIPY Chromophore
Shaban Ragab S., Swaminathan S., Deniz E., Captain B., Raymo F.M.
Organic Letters , 2013
332.
Activation of BODIPY fluorescence by the photoinduced dealkylation of a pyridinium quencher
Ragab S.S., Swaminathan S., Baker J.D., Raymo F.M.
Physical Chemistry Chemical Physics , 2013
333.
Synthesis and Properties of Novel Fluorescent Switches
Golovkova T.A., Kozlov D.V., Neckers D.C.
Journal of Organic Chemistry , 2005
334.
Photoswitchable Near-Infrared-Emitting Boron-dipyrromethene (BODIPY) Nanoparticles
Huang L., Gao Z., Han G.
Particle and Particle Systems Characterization , 2017
335.
Photoswitchable Fluorescent Dyads Incorporating BODIPY and [1,3]Oxazine Components
Deniz E., Ray S., Tomasulo M., Impellizzeri S., Sortino S., Raymo F.M.
Journal of Physical Chemistry A , 2010
336.
Photoactivatable BODIPYs Designed To Monitor the Dynamics of Supramolecular Nanocarriers
Zhang Y., Swaminathan S., Tang S., Garcia-Amorós J., Boulina M., Captain B., Baker J.D., Raymo F.M.
Journal of the American Chemical Society , 2015
337.
A Photoactivatable Far-Red/Near-Infrared BODIPY To Monitor Cellular Dynamics in Vivo
Sansalone L., Tang S., Garcia-Amorós J., Zhang Y., Nonell S., Baker J.D., Captain B., Raymo F.M.
ACS Sensors , 2018
338.
rcr_90_10_1213_bib338
Zhang
Chem. – Eur. J. , 2016
339.
rcr_90_10_1213_bib339
Liu
J. Mater. Chem. C , 2017